View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320R-Insertion-18 (Length: 352)
Name: NF1320R-Insertion-18
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-18 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 89 - 350
Target Start/End: Complemental strand, 19456923 - 19456662
Alignment:
| Q |
89 |
aaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttactgcaggagctcaatttctgcgaaagctatttaactttaccat |
188 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19456923 |
aaacaaaatactctatagtttgatcaattaaactgaaagcagtttcactaacctttactgcaggagttcaatttctgcgaaagctatttaactttaccat |
19456824 |
T |
|
| Q |
189 |
caaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaa |
288 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
19456823 |
caaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaa |
19456724 |
T |
|
| Q |
289 |
cctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||| |||||||||||||||||| || ||| ||| ||||||| |||||||||||||| |||| |
|
|
| T |
19456723 |
cctactgcaaatccaactcccaagccgagaaacattgattctcttatagagtcatcatcttc |
19456662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 130 - 345
Target Start/End: Complemental strand, 19465939 - 19465723
Alignment:
| Q |
130 |
gtttcactaacctttactgc-aggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19465939 |
gtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaac |
19465840 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19465839 |
cgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgatt |
19465740 |
T |
|
| Q |
329 |
cttttatagagtcatca |
345 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
19465739 |
cttttatcgattcatca |
19465723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 19394736 - 19394515
Alignment:
| Q |
130 |
gtttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
19394736 |
gtttcactaaccttaattggcaggacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacc |
19394637 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394636 |
cgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgatt |
19394537 |
T |
|
| Q |
329 |
cttttatagagtcatcaccttc |
350 |
Q |
| |
|
||||||||||||| ||| |||| |
|
|
| T |
19394536 |
cttttatagagtcttcatcttc |
19394515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 84 - 345
Target Start/End: Complemental strand, 18017655 - 18017393
Alignment:
| Q |
84 |
gaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactt |
182 |
Q |
| |
|
||||||||| |||||||||||| | |||| || |||| |||||| |||||||| ||||| | |||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
18017655 |
gaataaaacaaaatactctatatcatgatcaattcaacttaaagtacgttcactaatctttattagcagaagctcaacttctacgaaagctatttaactt |
18017556 |
T |
|
| Q |
183 |
taccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccc |
282 |
Q |
| |
|
|||||||||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18017555 |
taccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccc |
18017456 |
T |
|
| Q |
283 |
cataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
345 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
18017455 |
cagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatca |
18017393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 97 - 350
Target Start/End: Complemental strand, 19382514 - 19382259
Alignment:
| Q |
97 |
tactctatagtttcatcacttaaactgaaagtag-tttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagt |
194 |
Q |
| |
|
||||||||||||| || | | ||||| |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
19382514 |
tactctatagtttgattaataaaacttgaagtaggtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaat |
19382415 |
T |
|
| Q |
195 |
tacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgct |
294 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || |
|
|
| T |
19382414 |
aacatagagcttgtcacctactccatagataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctact |
19382315 |
T |
|
| Q |
295 |
gcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||| ||||||| |||||| |||| |
|
|
| T |
19382314 |
ccaaatccaactcccatgcctagatacaacgactctattatagattcatcatcttc |
19382259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 18872310 - 18872500
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18872310 |
gcaggagctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctcc |
18872409 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttataga |
338 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||| ||||||| |
|
|
| T |
18872410 |
atttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttataga |
18872500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 19352960 - 19352758
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
19352960 |
gcagaagctcatattctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctcc |
19352861 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
347 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19352860 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatcacc |
19352761 |
T |
|
| Q |
348 |
ttc |
350 |
Q |
| |
|
||| |
|
|
| T |
19352760 |
ttc |
19352758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 17951446 - 17951194
Alignment:
| Q |
94 |
aaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaa |
192 |
Q |
| |
|
|||||||||||| | |||| || |||| ||||||| ||||||||||||| || |||| ||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
17951446 |
aaatactctatatcgtgatcaattcaacttaaagtaggttcactaaccttttctagcagaagctcaacttctgcaaaagctatttaactttaccttcaaa |
17951347 |
T |
|
| Q |
193 |
gttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctg |
292 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17951346 |
gttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaaccta |
17951247 |
T |
|
| Q |
293 |
ctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatca |
345 |
Q |
| |
|
|||||||||| |||||||| || || |||||||||||||||| ||| |||||| |
|
|
| T |
17951246 |
ctgcaaatcccactcccataccaaggtacaatgattcttttagagattcatca |
17951194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 168 - 350
Target Start/End: Original strand, 17725989 - 17726171
Alignment:
| Q |
168 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
267 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17725989 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
17726088 |
T |
|
| Q |
268 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
17726089 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttc |
17726171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 168 - 350
Target Start/End: Original strand, 19027218 - 19027400
Alignment:
| Q |
168 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
267 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
19027218 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
19027317 |
T |
|
| Q |
268 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
19027318 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttc |
19027400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 119 - 338
Target Start/End: Complemental strand, 19401324 - 19401104
Alignment:
| Q |
119 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
217 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
19401324 |
aacttaaattaggttcactaacctttactagcaaaagctcaacttctatgaaagctatttaactttaccatcaaagttacatagagcctgttacccactc |
19401225 |
T |
|
| Q |
218 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
317 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
19401224 |
catatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaag |
19401125 |
T |
|
| Q |
318 |
atacaatgattcttttataga |
338 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
19401124 |
gtacaacgattcttttataga |
19401104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 119 - 345
Target Start/End: Complemental strand, 18110028 - 18109801
Alignment:
| Q |
119 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
217 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| |||| ||||||| ||| || ||||||||| |||||||||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
18110028 |
aacttaaattaggttcactaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactc |
18109929 |
T |
|
| Q |
218 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
18109928 |
catatataaaacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaag |
18109829 |
T |
|
| Q |
318 |
atacaatgattcttttatagagtcatca |
345 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
18109828 |
gtacaatgattcttttatagattcatca |
18109801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 153 - 350
Target Start/End: Complemental strand, 17943517 - 17943320
Alignment:
| Q |
153 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||| || |||||||||||| |||||||||||||||| |
|
|
| T |
17943517 |
agctcagtttctgcgaaagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccatttt |
17943418 |
T |
|
| Q |
253 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |||| |||||||||||||||||||||| |||| |
|
|
| T |
17943417 |
ctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatcatcttc |
17943320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 18166743 - 18166522
Alignment:
| Q |
130 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
|||||||||||||| || ||| || |||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| || |||||| |
|
|
| T |
18166743 |
gtttcactaaccttaaccagcatgaactcagtttctgagaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaac |
18166644 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
18166643 |
cgaaagtatgcatgtctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccatt |
18166544 |
T |
|
| Q |
329 |
cttttatagagtcatcaccttc |
350 |
Q |
| |
|
|| |||||||||||||| |||| |
|
|
| T |
18166543 |
ctcttatagagtcatcatcttc |
18166522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 159 - 344
Target Start/End: Complemental strand, 25464610 - 25464425
Alignment:
| Q |
159 |
atttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatg |
258 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25464610 |
atttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaata |
25464511 |
T |
|
| Q |
259 |
agaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatc |
344 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25464510 |
aaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatc |
25464425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 19377187 - 19377000
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
19377187 |
gcaggagcttaatttctttgaaacctgtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctcc |
19377088 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttat |
335 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19377087 |
atttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttat |
19377000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 19335580 - 19335378
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||| |||||||| ||||||| ||||||||| |||| ||| | |||||||||||| |||||||||| |
|
|
| T |
19335580 |
gcaggagctcaatttcttttaaacatgttcaactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctcc |
19335481 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
347 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
19335480 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtcatc |
19335381 |
T |
|
| Q |
348 |
ttc |
350 |
Q |
| |
|
||| |
|
|
| T |
19335380 |
ttc |
19335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 134 - 341
Target Start/End: Original strand, 14894807 - 14895015
Alignment:
| Q |
134 |
cactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaa |
232 |
Q |
| |
|
|||||||||| ||| || |||||||||||| | | |||| | ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14894807 |
cactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactccatcaataaaccgaa |
14894906 |
T |
|
| Q |
233 |
agtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttt |
332 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||| |||||||||||| |||||| || ||||||| ||||||| | |
|
|
| T |
14894907 |
agtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgccaagatacattgattctct |
14895006 |
T |
|
| Q |
333 |
tatagagtc |
341 |
Q |
| |
|
||||||||| |
|
|
| T |
14895007 |
tatagagtc |
14895015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 334
Target Start/End: Complemental strand, 16678871 - 16678589
Alignment:
| Q |
53 |
tgatcaatgaaatatgtcatagataaattatgaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttactgc-ag |
151 |
Q |
| |
|
|||||||| ||| |||||||| ||||| || ||||| ||| || ||||||||||||| || | | ||||| ||| ||| | |||||||||| ||| || |
|
|
| T |
16678871 |
tgatcaataaaagatgtcatacataaactacgaatacaacaaattactctatagtttgattaataaaacttaaaataggtccactaaccttcactattag |
16678772 |
T |
|
| Q |
152 |
gagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccattt |
251 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||||| || |||||| ||||||||||| |
|
|
| T |
16678771 |
gaactcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccattt |
16678672 |
T |
|
| Q |
252 |
cctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttta |
334 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||| | ||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
16678671 |
cctaataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattctttta |
16678589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 18117517 - 18117322
Alignment:
| Q |
155 |
ctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcct |
254 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | ||||||||||| ||||||||||||||||| |
|
|
| T |
18117517 |
ctcagtttcagcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcct |
18117418 |
T |
|
| Q |
255 |
aatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||| ||||||| |||||| |||| |
|
|
| T |
18117417 |
aataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatcatcttc |
18117322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 19426231 - 19426056
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| |||| |||| || | ||||||||||||||||||| ||||||| ||||| || ||||||||||||| |
|
|
| T |
19426231 |
tttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccac |
19426132 |
T |
|
| Q |
275 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
19426131 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttc |
19426056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 19355283 - 19355081
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| |||||||| ||||||| |||||||| |||| || | ||||||||||||||||||||||| |
|
|
| T |
19355283 |
gcaggagctcaatttcttttaaacccgtttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctcc |
19355184 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
347 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||| | |
|
|
| T |
19355183 |
attttctaattagaaacaaagaacggcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtcgtcatc |
19355084 |
T |
|
| Q |
348 |
ttc |
350 |
Q |
| |
|
||| |
|
|
| T |
19355083 |
ttc |
19355081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 18148405 - 18148184
Alignment:
| Q |
130 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| ||| ||||||||||||||||||||| |||| ||| |||||||| | |||||| |||| || | ||| |
|
|
| T |
18148405 |
gtttaactaaccttaactagcaggagctcagcttcggcgaaagctatttaactttacgatcacagtaacatagagatagtcacccactctatcaactaac |
18148306 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
18148305 |
cgaaagtacgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
18148206 |
T |
|
| Q |
329 |
cttttatagagtcatcaccttc |
350 |
Q |
| |
|
|| ||||||| |||||| |||| |
|
|
| T |
18148205 |
ctcttatagattcatcatcttc |
18148184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 19462767 - 19462546
Alignment:
| Q |
130 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||| |||| || | ||| |
|
|
| T |
19462767 |
gtttaactaaccttaactagcaggagctcagtttctgcgaaagctatttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaac |
19462668 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
19462667 |
cgaaagtacgcatgcctccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
19462568 |
T |
|
| Q |
329 |
cttttatagagtcatcaccttc |
350 |
Q |
| |
|
|| ||||||| |||||| |||| |
|
|
| T |
19462567 |
ctcttatagattcatcatcttc |
19462546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 345
Target Start/End: Complemental strand, 18105078 - 18104867
Alignment:
| Q |
135 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
233 |
Q |
| |
|
||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | |||||||| |
|
|
| T |
18105078 |
actaaccttaactagcaggagctcagtttcggcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaa |
18104979 |
T |
|
| Q |
234 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttt |
333 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||||| | || ||| |||||||||| |||||||| |||| |||||| || ||| || |
|
|
| T |
18104978 |
gtatgcatgcctccatttcctaataagaaacatagaaccgaaaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctctt |
18104879 |
T |
|
| Q |
334 |
atagagtcatca |
345 |
Q |
| |
|
||||| |||||| |
|
|
| T |
18104878 |
atagattcatca |
18104867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 153 - 343
Target Start/End: Complemental strand, 19415747 - 19415557
Alignment:
| Q |
153 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||| |||||||| ||| | | |||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
19415747 |
agctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcatttt |
19415648 |
T |
|
| Q |
253 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcat |
343 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
19415647 |
ctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttcatagaatcat |
19415557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 165 - 350
Target Start/End: Complemental strand, 19438497 - 19438312
Alignment:
| Q |
165 |
gcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaac |
264 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || | ||||| ||| || | ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
19438497 |
gcgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaac |
19438398 |
T |
|
| Q |
265 |
aaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||| ||||||| |||||| |||| |
|
|
| T |
19438397 |
atagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatcatcttc |
19438312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 313
Target Start/End: Original strand, 24493200 - 24493377
Alignment:
| Q |
135 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
233 |
Q |
| |
|
||||||||| ||| |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||| | ||||||| ||||||| |||||||| | |
|
|
| T |
24493200 |
actaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggta |
24493297 |
T |
|
| Q |
234 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatcc |
313 |
Q |
| |
|
||| || ||||||||||||||||| ||||| |||| |||||| ||| ||| |||||| || |||| ||||||||||||| |
|
|
| T |
24493298 |
gtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccatcc |
24493377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 319
Target Start/End: Original strand, 24496662 - 24496823
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||| ||| |||||| || |||||| ||||| || |
|
|
| T |
24496662 |
gcaggagctcaattttagtgaaaattatttaaatttaccatcaaagttacatagagcttgt---------catcgataaactgatagtatgtatgcc-cc |
24496751 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagat |
319 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||| |||||| | |||||||||||||||| ||||||| |
|
|
| T |
24496752 |
atttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatgcctagat |
24496823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 53 - 350
Target Start/End: Complemental strand, 8461230 - 8460932
Alignment:
| Q |
53 |
tgatcaatgaaatatgtcatagataaattatgaataaaactaaatactctatagtttcatcacttaaactgaaagtagtttcactaacctttact-gcag |
151 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| || | ||| | ||||| ||||||| ||||||||||||| || |||| |
|
|
| T |
8461230 |
tgatcaatgaaacatgtcatagataaattatgcataaaacaaaatattctatggtgtgttcaataaaacttaaagtaggttcactaacctttgctagcag |
8461131 |
T |
|
| Q |
152 |
gagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccattt |
251 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||| | ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
8461130 |
gagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccattt |
8461031 |
T |
|
| Q |
252 |
cctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
8461030 |
cctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcatcttc |
8460932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 338
Target Start/End: Original strand, 2708889 - 2709195
Alignment:
| Q |
31 |
aaacaaaatactctatagtctctgatcaatgaaatatgtcatagataaattatgaataaaactaaatactctatagtttcatcacttaaactga-aagta |
129 |
Q |
| |
|
|||||||||||||| |||| | ||||||| ||| |||||||| ||| ||| |||||||||| ||||| | |||||||| |||| | |||||| ||||| |
|
|
| T |
2708889 |
aaacaaaatactctctagttt--gatcaataaaacatgtcatacatatattgtgaataaaacaaaatattgtatagtttgatcaat-aaactgtgaagta |
2708985 |
T |
|
| Q |
130 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
228 |
Q |
| |
|
| |||||||||||| ||| | || ||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2708986 |
ggttcactaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatcatcaaagttacatagagcttgtcacctactccatcaataaac |
2709085 |
T |
|
| Q |
229 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
328 |
Q |
| |
|
||| |||||| | ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2709086 |
cgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaatgatt |
2709185 |
T |
|
| Q |
329 |
cttttataga |
338 |
Q |
| |
|
|| ||||||| |
|
|
| T |
2709186 |
ctcttataga |
2709195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 15537101 - 15536899
Alignment:
| Q |
148 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
247 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
15537101 |
gcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatgcatgcctcc |
15537002 |
T |
|
| Q |
248 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
347 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
15537001 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttagagtcatcatc |
15536902 |
T |
|
| Q |
348 |
ttc |
350 |
Q |
| |
|
||| |
|
|
| T |
15536901 |
ttc |
15536899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 153 - 350
Target Start/End: Original strand, 13665385 - 13665582
Alignment:
| Q |
153 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
252 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| | |||||| ||||| || |||| || | |||||||||| |||||||||||||||| |
|
|
| T |
13665385 |
agctcagttcctgcgaaagctatttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccatttt |
13665484 |
T |
|
| Q |
253 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || || | ||||||||||||||||||||| ||| |||| |
|
|
| T |
13665485 |
ctaataagaaacaaagaaccacatatcccccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattcttttatagagtcgtcatcttc |
13665582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 22127 - 21952
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22127 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
22028 |
T |
|
| Q |
275 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
22027 |
aaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttc |
21952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 350
Target Start/End: Original strand, 2029 - 2204
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2029 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
2128 |
T |
|
| Q |
275 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
2129 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttc |
2204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 350
Target Start/End: Original strand, 2558 - 2734
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2558 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
2657 |
T |
|
| Q |
275 |
aaat-cccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
2658 |
aaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttc |
2734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 6944 - 6769
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6944 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
6845 |
T |
|
| Q |
275 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
6844 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttc |
6769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 12042 - 11867
Alignment:
| Q |
175 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
274 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12042 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
11943 |
T |
|
| Q |
275 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttc |
350 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
11942 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttc |
11867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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