View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-20 (Length: 338)
Name: NF1320R-Insertion-20
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 45318054 - 45317724
Alignment:
| Q |
8 |
acatgttacaataaccatatattccaagagacctaaataaaatgggcttacaagcttgannnnnnnnnnnnnnnnnnnnggtaagcacaaagactcttcc |
107 |
Q |
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| T |
45318054 |
acatgttacaataacaatatattccaagagacctaaataaaatgggcttacaagcttgaatcatcattcatcatcatcaggtaagcacaaagactcttcc |
45317955 |
T |
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| Q |
108 |
ttaggctgaattcctccaagtttatgatccacttttccagattctataacatgcaagtcctcaagaaggatcacataatgctcttgaacgtcccctgcac |
207 |
Q |
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| T |
45317954 |
ttaggctgaattcctccaagtttatgatccacttttccagattctataacatgcaagtcctcaagaaggatcacataatgctcttgaacgtcccctgcac |
45317855 |
T |
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| Q |
208 |
tcttatcacctccaaccatggctgctactacctcccatcgttccgggtgtttctcatctaccattgctaaagccagctcaaacaacttgttctctttcca |
307 |
Q |
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| T |
45317854 |
tcttatcacctccaaccatggctgctactacctcccatcgttccgggtgtttctcatctaccattgctaaagccagctcaaacaacttgttctctttcca |
45317755 |
T |
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| Q |
308 |
actccacccacaaaagctccaagccatatca |
338 |
Q |
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| T |
45317754 |
actccacccacaaaagctccaagccatatca |
45317724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 38579264 - 38579455
Alignment:
| Q |
128 |
tttatgatccacttttccagattctataacatgcaagtcctcaagaaggatcacataatgctcttgaacgtcccctgcactcttatcacctccaaccatg |
227 |
Q |
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| T |
38579264 |
tttatgatcaaattttccagattctataagctccaaatcctccaaaagtatcacataatgcttttgaacctcccctgcacttttttcacctccaaccata |
38579363 |
T |
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| Q |
228 |
gctgctactacctcccatcgttccgggtgtttctcatctaccattgctaaagccagctcaaacaacttgttctctttccaactccacccaca |
319 |
Q |
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| T |
38579364 |
gctgcaaccatctcccacctttctggatgactctcatctactaaagctaaagctagctcaaacaatttgttctccttccaactccacccaca |
38579455 |
T |
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