View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-22 (Length: 319)
Name: NF1320R-Insertion-22
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 14729185 - 14729500
Alignment:
| Q |
9 |
gtatgtatatgctggtgtccatacctagttaat-taatgcatattgcatgtacttttatgtcctgaaatcttctgaattatgatgtttaa-tatttagca |
106 |
Q |
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| T |
14729185 |
gtatgtatatgctggtgtccatacctagttaatgtaatgcatattgcatgtacttttatgtcctgaaatcttctgaattatgatgtttaattatttagca |
14729284 |
T |
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| Q |
107 |
cttacaatcaacctttctttctc----ttatgcctgttatatgcatgtaacttgaaattcttctgtcaaattttatattgtaattatg-nnnnnnnnnnc |
201 |
Q |
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| T |
14729285 |
cttacaatcaacctttctttctctttgttatgcctgttatatgcatgtaacttgaaattct--tgtcaaattttatattgtaattatgtttttttttatc |
14729382 |
T |
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| Q |
202 |
aataaaataatttctatacatatagtaatttgactttaagagcatcaggaatgttgtttctgttactaaaacttgagatagttgcatctgcatgcgcgct |
301 |
Q |
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| T |
14729383 |
aataaaataatttctatacatatagtaatttgactttaagagcatcaggaatgttgtttctgttactaaaacttgagatagttgaatctgcatgcgcgct |
14729482 |
T |
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| Q |
302 |
gttctttggtttttattg |
319 |
Q |
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| T |
14729483 |
gttctttggtttttattg |
14729500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 13954621 - 13954466
Alignment:
| Q |
34 |
tagttaat-taatgcatattgcatgtacttttatgtcctgaaatcttctgaattatgatgttt-aatatttagcacttacaatcaacctttctttctc-- |
129 |
Q |
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| T |
13954621 |
tagttaatataatgcatgttgcatgtgattttatgtcttgcaatcttctgtattatgatgtttgattattttgctctttcattcagcctttctttctccc |
13954522 |
T |
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| Q |
130 |
--ttatgcctgttatatgcatgtaacttgaaattcttctgtcaaattttatattgt |
183 |
Q |
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| T |
13954521 |
tgttatgcttgttatatgcatgttaattgtaaagcttctgtcaaattttacattgt |
13954466 |
T |
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