View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-24 (Length: 155)
Name: NF1320R-Insertion-24
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 2151114 - 2151260
Alignment:
| Q |
9 |
gttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaaat |
108 |
Q |
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| T |
2151114 |
gttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctatgtgaaat |
2151213 |
T |
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| Q |
109 |
aattcgaaggctcgagcaaaatccttgacagtgacaaagttataagg |
155 |
Q |
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| T |
2151214 |
aattcgaaggctcgagcaaaatccttgacagtgacaaagttataagg |
2151260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 2163402 - 2163538
Alignment:
| Q |
19 |
tatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaaataattcgaagg |
118 |
Q |
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| T |
2163402 |
tatttctttgtggtcaagacacttgcatggcatttcgacttgtcaaaaggattggctagctcatctccaagtttttgacctatgtgaaatatctgaaatg |
2163501 |
T |
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| Q |
119 |
ctcgagcaaaatccttgacagtgacaaagttataagg |
155 |
Q |
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| T |
2163502 |
cttcggcaaaatccttgacagtaacaaaactataagg |
2163538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 4302546 - 4302471
Alignment:
| Q |
16 |
ccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagtt |
91 |
Q |
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| T |
4302546 |
ccatatttctttgtggtcaagacatttgcatggcatttagatttttcaaaaggattggctagctcatctccaagtt |
4302471 |
T |
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