View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320R-Insertion-25 (Length: 152)

Name: NF1320R-Insertion-25
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320R-Insertion-25
NF1320R-Insertion-25
[»] chr4 (6 HSPs)
chr4 (11-152)||(2541367-2541508)
chr4 (77-150)||(7395279-7395352)
chr4 (80-150)||(22093481-22093551)
chr4 (11-83)||(26063316-26063387)
chr4 (11-58)||(647826-647873)
chr4 (16-86)||(26060135-26060205)
[»] chr6 (13 HSPs)
chr6 (76-148)||(20189867-20189939)
chr6 (76-148)||(22146052-22146124)
chr6 (76-150)||(16730983-16731057)
chr6 (11-70)||(15537847-15537906)
chr6 (16-70)||(19665292-19665346)
chr6 (11-70)||(1838037-1838096)
chr6 (11-70)||(15534652-15534711)
chr6 (11-78)||(20527785-20527852)
chr6 (11-58)||(13017812-13017859)
chr6 (11-58)||(14790194-14790241)
chr6 (11-58)||(14795222-14795269)
chr6 (11-58)||(32704876-32704923)
chr6 (11-69)||(16883241-16883299)
[»] chr7 (13 HSPs)
chr7 (76-150)||(26809172-26809246)
chr7 (16-91)||(36843565-36843641)
chr7 (19-70)||(23313832-23313883)
chr7 (16-70)||(9765361-9765415)
chr7 (11-68)||(3862518-3862575)
chr7 (11-58)||(6966723-6966770)
chr7 (11-58)||(17863717-17863764)
chr7 (11-58)||(17866976-17867023)
chr7 (11-58)||(23760231-23760278)
chr7 (36-70)||(23107554-23107588)
chr7 (16-70)||(35773159-35773213)
chr7 (11-58)||(11279068-11279115)
chr7 (11-58)||(46846932-46846979)
[»] chr2 (6 HSPs)
chr2 (76-145)||(11059410-11059479)
chr2 (76-144)||(13517919-13517987)
chr2 (11-70)||(32576308-32576367)
chr2 (11-58)||(40017553-40017600)
chr2 (11-58)||(31527965-31528012)
chr2 (11-58)||(31626123-31626170)
[»] chr5 (9 HSPs)
chr5 (76-144)||(28562795-28562863)
chr5 (76-144)||(28566363-28566431)
chr5 (72-150)||(42062553-42062628)
chr5 (11-58)||(34405424-34405471)
chr5 (11-58)||(14617051-14617098)
chr5 (11-58)||(15532823-15532870)
chr5 (11-58)||(15543005-15543052)
chr5 (11-70)||(22159307-22159366)
chr5 (11-58)||(33574664-33574711)
[»] chr3 (7 HSPs)
chr3 (76-144)||(2783736-2783804)
chr3 (72-150)||(18645107-18645182)
chr3 (76-150)||(35412232-35412303)
chr3 (11-70)||(13979054-13979113)
chr3 (11-58)||(11139191-11139238)
chr3 (11-58)||(22626935-22626982)
chr3 (30-70)||(31878312-31878352)
[»] scaffold0567 (1 HSPs)
scaffold0567 (11-70)||(6432-6491)
[»] chr8 (2 HSPs)
chr8 (11-70)||(12575922-12575981)
chr8 (11-70)||(13096594-13096653)
[»] chr1 (7 HSPs)
chr1 (11-70)||(1936191-1936250)
chr1 (11-70)||(16190799-16190858)
chr1 (11-58)||(10759697-10759744)
chr1 (16-70)||(34065908-34065962)
chr1 (11-55)||(23990710-23990754)
chr1 (11-58)||(13492838-13492885)
chr1 (11-58)||(13495563-13495610)
[»] scaffold0665 (1 HSPs)
scaffold0665 (11-58)||(267-314)
[»] scaffold0500 (1 HSPs)
scaffold0500 (11-58)||(2267-2314)
[»] scaffold0063 (1 HSPs)
scaffold0063 (11-58)||(7615-7662)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 6e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 2541508 - 2541367
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagctagacatagaaatataaataaatagc 110  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  2541508 aggaattcaacaaattagagttcccataagattacattagattcatctaagtctcaaccaatagagaaattagctaaacatagaaatacaaataaatagc 2541409  T
Q  111 atggaaaataaaattaaccatgaaaccatgttgttcctcatt 152  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2541408 atggaaaataaaattaaccatgaaaccatgttgttcctcatt 2541367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 7395279 - 7395352
Alignment:
Q  77 aaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    |||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  7395279 aaattaactagacatagagatacaaataaatagcatgaaaaataaaattaaccacaaaaacatgttgttcctca 7395352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 22093481 - 22093551
Alignment:
Q  80 ttagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||  | ||| ||||||||||    
T  22093481 ttagctacacatagagatacaaataaatatcttggaaaataaaattaaccatgtcatcatcttgttcctca 22093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 26063316 - 26063387
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattag 83  Q
    |||| |||||||||| || ||||||||| |||||||| | |||||||| ||||||||||| || |||||||||    
T  26063316 aggagttcaacaaatcagggttcccatatgattacattagattcatctcagtctcaaccacaa-agaaattag 26063387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 647826 - 647873
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  647826 aggagttcaacaaattagggttcccataggattacatcagattcatct 647873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 26060205 - 26060135
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagcta 86  Q
    ||||||||| |||  ||| ||||  |||| ||||||||||||||||||||||||||  || ||||||||||    
T  26060205 ttcaacaaactaggattctcatacaattatatcatattcatctaagtctcaaccaattgaaaaattagcta 26060135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 20189867 - 20189939
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 148  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  20189867 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 20189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 22146124 - 22146052
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 148  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22146124 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 22146052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 16731057 - 16730983
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  16731057 gaaattagctagacatagagatacaaataaatagcatgaaaactaaaattaaccatgaaaacatgttgttcctca 16730983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15537906 - 15537847
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  15537906 aggagttcaacaaattagggttcccatatgattacatcaaattcatctcagtctcaacca 15537847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 19665292 - 19665346
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  19665292 ttcaacaaattagggttcccataggattacatcagattcatctcagtctcaacca 19665346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 1838096 - 1838037
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||| ||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  1838096 aggagttcaataaattagggttcccataggattacatcagattcatctcagtctcaacca 1838037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15534711 - 15534652
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||    
T  15534711 aggagttcaacaaattagggttcccataggattacatcagattcatctcaatctcaacca 15534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 20527785 - 20527852
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaa 78  Q
    |||| ||||||| ||||  |||||||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  20527785 aggagttcaacacattaaggttcccataaaattacatcagattcatctaggtctcaaccaaaaaagaa 20527852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 13017812 - 13017859
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  13017812 aggagttcaacaaattagggttcccataggattacatcagattcatct 13017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14790241 - 14790194
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14790241 aggagttcaacaaattagggttcccataggattacatcagattcatct 14790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14795269 - 14795222
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14795269 aggagttcaacaaattagggttcccataggattacatcagattcatct 14795222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 32704876 - 32704923
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  32704876 aggagttcaacaaattagggttcccataggattacatcagattcatct 32704923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 16883299 - 16883241
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacc 69  Q
    |||| ||||||||||||| |||| ||||| ||||||||| |||||| ||||||| ||||    
T  16883299 aggagttcaacaaattagggttctcataaaattacatcagattcatttaagtcttaacc 16883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 26809172 - 26809246
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  26809172 gaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacaggttgttcctca 26809246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 36843565 - 36843641
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca-aaagagaaattagctagacat 91  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||| || |||| |||||||    
T  36843565 ttcaacaaattagagttcccacaagattacatcaaattcatctaagtctcagccacaaagaaaatttaggtagacat 36843641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 23313832 - 23313883
Alignment:
Q  19 aacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  23313832 aacaaattagagttcccataagattacatcggattcatctaagtctcaacca 23313883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 9765415 - 9765361
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  9765415 ttcaacaaattagggttctcataggattacatcatattcatctaagtctcaacca 9765361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 3862518 - 3862575
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaac 68  Q
    |||| ||||||||||||| |||| ||||||||||||| | ||||| ||||||||||||    
T  3862518 aggagttcaacaaattagggttctcataagattacattagattcaactaagtctcaac 3862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 6966770 - 6966723
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  6966770 aggagttcaacaaattagggttcccataggattacatcagattcatct 6966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 17863717 - 17863764
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17863717 aggagttcaacaaattagggttcccataggattacatcagattcatct 17863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 17866976 - 17867023
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17866976 aggagttcaacaaattagggttcccataggattacatcagattcatct 17867023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 23760231 - 23760278
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  23760231 aggagttcaacaaattagggttcccataggattacatcagattcatct 23760278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 23107588 - 23107554
Alignment:
Q  36 ataagattacatcatattcatctaagtctcaacca 70  Q
    |||||||||||||| ||||||||||||||||||||    
T  23107588 ataagattacatcaaattcatctaagtctcaacca 23107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 35773159 - 35773213
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    ||||||||||||||||||  ||| |||||||| | |||||||| |||||||||||    
T  35773159 ttcaacaaattagagttcttataggattacataagattcatctcagtctcaacca 35773213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 11279115 - 11279068
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| | |||||||| ||||||||    
T  11279115 aggagttcaacaaattagggttcccatagggttacatcagattcatct 11279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 46846932 - 46846979
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| | |||||||| ||||||||    
T  46846932 aggagttcaacaaattagggttcccatagggttacatcagattcatct 46846979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 11059479 - 11059410
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgtt 145  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11059479 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgtt 11059410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 13517987 - 13517919
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 144  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  13517987 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgt 13517919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 32576308 - 32576367
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  32576308 aggagttcaacaaattagggttcctataggattacatcatattcatctaagtctcaacca 32576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 40017600 - 40017553
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  40017600 aggagttcaacaaattagggttcccataggattacatcatattcatct 40017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31528012 - 31527965
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  31528012 aggagttcaacaaattagggttcccataggattacatcagattcatct 31527965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31626170 - 31626123
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| |||||| || |||||||||| ||||||||    
T  31626170 aggagttcaacaaattagggttcccgtaggattacatcagattcatct 31626123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 9e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 28562795 - 28562863
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 144  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  28562795 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28562863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 28566363 - 28566431
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 144  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  28566363 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28566431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 42062628 - 42062553
Alignment:
Q  72 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||||||||||||||||    
T  42062628 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctca 42062553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 34405471 - 34405424
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  34405471 aggagttcaacaaattagggttcccataggattacatcagattcatct 34405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 14617051 - 14617098
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||| ||| |||| |||| |||||||||||||||||||    
T  14617051 aggagttcaacaaactagggttctcataggattacatcatattcatct 14617098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 15532823 - 15532870
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| | |||||||| ||||||||    
T  15532823 aggagttcaacaaattagggttcccatagggttacatcagattcatct 15532870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 15543005 - 15543052
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| | |||||||| ||||||||    
T  15543005 aggagttcaacaaattagggttcccatagggttacatcagattcatct 15543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 22159366 - 22159307
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| |||||| || |||||||||  |||||||| | |||||||||    
T  22159366 aggagttcaacaaattagggttcccgtaggattacatcggattcatctcattctcaacca 22159307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 33574711 - 33574664
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| | |||||||| ||||||||    
T  33574711 aggagttcaacaaattagggttcccatagggttacatcagattcatct 33574664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 9e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 2783804 - 2783736
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 144  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  2783804 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 2783736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 18645107 - 18645182
Alignment:
Q  72 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||| ||||||||||||    
T  18645107 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accgtgttgttcctca 18645182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 35412303 - 35412232
Alignment:
Q  76 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctca 150  Q
    ||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||||||||||||||||    
T  35412303 gaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctca 35412232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 13979113 - 13979054
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| |||||||||||||||| ||| |||| ||||||||| |||||    
T  13979113 aggagttcaacaaattagggttcccataagattacctcagattcgtctaagtcttaacca 13979054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 11139191 - 11139238
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  11139191 aggagttcaacaaattagggttcccataggattacatcagattcatct 11139238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 22626935 - 22626982
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  22626935 aggagttcaacaaattagggttcccataggattacatcagattcatct 22626982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 31878312 - 31878352
Alignment:
Q  30 gttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| |||||||||| |||| ||||||||||||||||||||    
T  31878312 gttctcataagattatatcagattcatctaagtctcaacca 31878352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 6432 - 6491
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||||| |||||||||    
T  6432 aggagttcaacaaattaaggttcccataagattacatcagattcatctaaatctcaacca 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12575922 - 12575981
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  12575922 aggagttcaacaaattagggttcctataggattacatcagattcatctaagtctcaacca 12575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 13096653 - 13096594
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||| |||| || ||||||||| ||||||||||  |||||||||||||||||||    
T  13096653 aggagttcaataaatcagggttcccataggattacatcaggttcatctaagtctcaacca 13096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 1936250 - 1936191
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||  |||||||||||||||||| | ||||||||||||||||||||    
T  1936250 aggagttcaacaaattatggttcccataagattacatgagattcatctaagtctcaacca 1936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 16190799 - 16190858
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  16190799 aggagttcaacaaattagggttcctataagattacatcagattcatctaagactcaacca 16190858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 10759744 - 10759697
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  10759744 aggagttcaacaaattagggttcccataggattacatcagattcatct 10759697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 34065962 - 34065908
Alignment:
Q  16 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 70  Q
    |||||||||||||  |||||||||||||||||||  |||||| |||||| |||||    
T  34065962 ttcaacaaattaggattcccataagattacatcaagttcatcaaagtcttaacca 34065908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23990710 - 23990754
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattca 55  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||    
T  23990710 aggagttcaacaaattagtgttcccataagattaaatcagattca 23990754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 13492885 - 13492838
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||| ||| |||||||||||||||||||| ||| ||||    
T  13492885 aggagttcaacaaactagggttcccataagattacatcaaatttatct 13492838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 13495610 - 13495563
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||| ||| ||||||||| |||||||||||||| ||||    
T  13495610 aggagttcaacaaactagggttcccataggattacatcatatttatct 13495563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 267 - 314
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  267 aggagttcaacaaattagggttcccataggattacatcagattcatct 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 2314 - 2267
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| |||||| || |||||||||| ||||||||    
T  2314 aggagttcaacaaattagggttcccgtaggattacatcagattcatct 2267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7615 - 7662
Alignment:
Q  11 aggaattcaacaaattagagttcccataagattacatcatattcatct 58  Q
    |||| ||||||||||||| |||||| || |||||||||| ||||||||    
T  7615 aggagttcaacaaattagggttcccgtaggattacatcagattcatct 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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