View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-3 (Length: 976)
Name: NF1320R-Insertion-3
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 9 - 646
Target Start/End: Complemental strand, 258685 - 258044
Alignment:
| Q |
9 |
attgccatagccagaatagtcactattgtgacaaatatggttctccaaattagcctaaataaattcaagttgcaaatgcctattgagtattctcggctta |
108 |
Q |
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| T |
258685 |
attgccatagccagaatagtcactattgtgacaaatatggttctccaaattagcctaaataagttcaagttgcaaatgcctattgagtattctcggctta |
258586 |
T |
|
| Q |
109 |
taaaacttgatttcggccacctttgaccaaccaacgattcaaccacgccgaaaataggttggacaatgacctgcatatgcacaatttcttcatgatcaat |
208 |
Q |
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| T |
258585 |
taaaacttgatttcggccacctttgaccaaccaacgattcaaccacgccgaaaataggttggacaatgacctgcatatgcacaatttcttcatgatcaat |
258486 |
T |
|
| Q |
209 |
gattacttctaatattcaaataaatcataagatgtgaacgataataagaagaattcaaaagtttagtgtgaaacctgatatgctccaaccaaatgcacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258485 |
gattacttctaatattcaaataaatcataagatgtgaatgataataagaagaattcaaaagtttagtgtgaaacctgatatgctccaaccaaatgcacaa |
258386 |
T |
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| Q |
309 |
caaggaagacattggctaaatcaacaagccaaaaaggctctttaaagccagaccccataaggatgcttcctggagtgttggaaccaaatgcagcatagcc |
408 |
Q |
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| T |
258385 |
caaggaagacattggctaaatcaacaagccaaaaaggctctttaaagccagaccccataaggatgcttcctggagtgttggaaccaaatgcagcatagcc |
258286 |
T |
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| Q |
409 |
agaacaggcacataagaggaagataattgtcattgctgataatcctactttgtttgccatcttcatcactttattttctggtggtgatgactttaatgaa |
508 |
Q |
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| T |
258285 |
agaacaggcacataagaggaagataattgtcattgctgataatcctactttgtttgccatcttcatcactttattttctggtggtgatgactttaatgaa |
258186 |
T |
|
| Q |
509 |
tcctatttttcacagcacacatatgat----tatttcaattaaatgaaagagaatgcaattctggttgcagtaaatacaaaaaacttctgtttgctaata |
604 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258185 |
tcctatttttcacagcacacatatgattatatatttcaattaaatgaaagagaatgcaattctggttgcagtaaatacaaaaaacttctgtttgctaata |
258086 |
T |
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| Q |
605 |
acttccttttcttgtagaattttggtctcttatctcactctt |
646 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
258085 |
acttctttttcttgtagaattttggtctcttatctcactctt |
258044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 702 - 884
Target Start/End: Complemental strand, 258023 - 257841
Alignment:
| Q |
702 |
atactgaatattcatgtcaacaaatatatgcctaataaacgtcgccacgtcaaaaaagtgttgtcacggcacatagaataagccacatcatca-aaaacg |
800 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
258023 |
atactgaatattcatgtcaacaaatatatgcctaatgaacgtcgccacgtaaaaaaagtgttgtcacggcacatagaataagccacatcatcaaaaaacg |
257924 |
T |
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| Q |
801 |
ac-aaaataagatgaatgataaaaatatgtaggaaaacaaact-aagtggagaattaatagactgttttt-aaatagaggactaaaa |
884 |
Q |
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|| ||||||||||||||||||||||| | |||||| ||||| || ||||||||||||| ||||||||| |||||||||||||||| |
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| T |
257923 |
acaaaaataagatgaatgataaaaat---ttggaaaa-aaactaaattggagaattaataaactgtttttaaaatagaggactaaaa |
257841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 51542281 - 51542242
Alignment:
| Q |
459 |
tgtttgccatcttcatcactttattttctggtggtgatga |
498 |
Q |
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| T |
51542281 |
tgtttgccctcttcatcactttattttctggaggtgatga |
51542242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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