View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-4 (Length: 905)
Name: NF1320R-Insertion-4
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 9 - 846
Target Start/End: Complemental strand, 5329783 - 5328945
Alignment:
| Q |
9 |
aaagagacccgccacataaacacctaactatcatgaaaatgcccaaagccaccccaaaaaacaaccaaactccagcaaatgcatatccatgaactcctgt |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329783 |
aaagagacccaccacataaacacctaactatcatgaaaatgcccaaagccaccccaaaaaacaaccaaactccagcaaatgcatatccatgaactcctgt |
5329684 |
T |
|
| Q |
109 |
aaatgccgcagactgaaaaggatcagaaaccaatactcaatcaatctcannnnnnncaattctatatgccaccacaaaattagtgttaattatcttgttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
5329683 |
aaatgccgcagactgaaaaggatcagaaaccaatactcaatcaatctcatttttt-caattctatatgcctccacaaaattagtgttaattatcttgtct |
5329585 |
T |
|
| Q |
209 |
taatagatcaaattcattccattaacatattatagtgcattttatgtattaatttattgaagatttataagatgtaccactcttttgcaattataactaa |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5329584 |
taatagatcaaattaattccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattataactaa |
5329485 |
T |
|
| Q |
309 |
tataacataatttgatggtctaaaagatcatgtagtagaaagaaaatatgagaagcatgtttagaaatgatttataannnnnnnattaaccgatgtgaaa |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5329484 |
tataacataatttgatggtctaaaagatcatgtagtagaaagaaaatatgagaagcatgtttagaaatgatttataatttttttattaaccgatgtgaaa |
5329385 |
T |
|
| Q |
409 |
catggaaaatgcaacgattattgtgggatgcatggagtaatacttgggaaatagagatttggatttggaaagtaactcacagctaagtaatgtttgtttc |
508 |
Q |
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| T |
5329384 |
catggaaaatgcaacaattattatgggacgcatggagtaatatttgggaaatagagatttggatttggaaagtaactcacagctaagtaatgtttgtttc |
5329285 |
T |
|
| Q |
509 |
gaacatcgaactctccattgtagtctttgaaatgtcgtaaaggatcgggtctcttgaaggtctttccatgaattgaagactctgctgaagctaaacattt |
608 |
Q |
| |
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| T |
5329284 |
gaacatcgaactctccattgtagtctttgaaatgtcgtaaaggatcgggtctcttgaaggtctttccatgaattgaagactctgctgaagctaaacattt |
5329185 |
T |
|
| Q |
609 |
gtgttgaaaagatggaactgaaatcaagaacaagagaaacaaaagaaacaacaaacggtagtcggttgagtagagcatggcagagtctgctgtgttgtgg |
708 |
Q |
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| T |
5329184 |
gtgttgaaaagatggaactgaaatcaagaacaagagaaacaaaagaaacaacaaacggtagttggttgagtagagcatggcagagtctgctgtgttgtgg |
5329085 |
T |
|
| Q |
709 |
ttattgagcaaagnnnnnnngacaacatttggttttgtct-aaaataaaaatggtgacaactttttgaggaagggaatttacgtgtaactcattgagcaa |
807 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329084 |
ttattgagcaaagaaaaaaagacaacatttggttttgtctaaaaataaaaatggtgacaactttttgaggaagggaatttacgtgtaactcattgagcaa |
5328985 |
T |
|
| Q |
808 |
ggtaagaatagcttgtggcatgg-tttgtgggaattaatg |
846 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5328984 |
ggtaagaatagcttgtggcatggttttgtgggaattaatg |
5328945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 5335848 - 5335762
Alignment:
| Q |
263 |
tattgaagatttataagatgtaccactcttttgcaattataactaatataacataatttgatggtctaaaagatcatgtagtagaaag |
350 |
Q |
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|||||||||||||||| || |||||||||||| ||||| ||| || | ||| |||||||||| |||||||| ||||||||||| |||| |
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| T |
5335848 |
tattgaagatttataa-atataccactcttttccaattgtaaatagtgtaatataatttgatagtctaaaatatcatgtagtataaag |
5335762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 5334901 - 5334825
Alignment:
| Q |
271 |
atttataagatgtaccactcttttgcaattataactaatataacataatttgatggtctaaaagatcatgtagtagaaag |
350 |
Q |
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|||||||| ||||| ||||||||||||||| || ||| || |||||||||| |||||||| |||||||||||||||| |
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| T |
5334901 |
atttataaaatgtatcactcttttgcaattgcaattaacat---ataatttgatagtctaaaatatcatgtagtagaaag |
5334825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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