View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-5 (Length: 832)
Name: NF1320R-Insertion-5
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 230 - 832
Target Start/End: Original strand, 53053348 - 53053950
Alignment:
| Q |
230 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
329 |
Q |
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| T |
53053348 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
53053447 |
T |
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| Q |
330 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
429 |
Q |
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| T |
53053448 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
53053547 |
T |
|
| Q |
430 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgtta |
529 |
Q |
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| T |
53053548 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgtca |
53053647 |
T |
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| Q |
530 |
gggtatgtgtgtaatttacttctcatttcattattttcttattaattaaactctaatgagaaatttgtgcatgtttatatgctaaatagatacttgcttt |
629 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53053648 |
gggtatgtctgtaatttacttctcatttcattattttcttattaattaaacattaatgagaaatttgtgcatgtttatatgctaaatagatacttgcttt |
53053747 |
T |
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| Q |
630 |
tatagggttgtgatgcttcgattttgcttgcaactccgaaggcagagagggaacatcctgatgatatatcactagctggtgacggttttgacacggtggt |
729 |
Q |
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| T |
53053748 |
tacagggttgtgatgcttcgattttgcttgcaactccgaaggcagagagggaacatcctgatgatatatcactagctggtgatggttttgacacggtggt |
53053847 |
T |
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| Q |
730 |
taaggccaaggcagcagttgatagggatcctaaatgccgaaacaaagtctcttgtgctgatattctcgctctcgcaactagggatgttgtcaatttggta |
829 |
Q |
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| T |
53053848 |
taaggccaaggcagcagttgatagggatcctaaatgccgaaacaaagtctcttgtgctgatattctcgctctcgcaactagggatgttgtcaatttggta |
53053947 |
T |
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| Q |
830 |
cca |
832 |
Q |
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| T |
53053948 |
cca |
53053950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 53053126 - 53053288
Alignment:
| Q |
8 |
atattgtatccccaatcatcctttagtccataacataacaatattacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacag |
107 |
Q |
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| T |
53053126 |
atattgtaaccccaatcatcctttagtccataacatagcaatatgacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacag |
53053225 |
T |
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| Q |
108 |
acttttgttttgattctcatcaatcaattattcttcaatcatgccccttcaaaagtgtaaccc |
170 |
Q |
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| T |
53053226 |
actttcgttttgattctcatcaatcaattattctttaatcatgccccttcaaaagtgtaaccc |
53053288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 1493276 - 1493337
Alignment:
| Q |
467 |
ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgtt |
528 |
Q |
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|||| ||||||||||| || || ||||| || ||||| || ||||||||||||||||||||| |
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| T |
1493276 |
ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgtt |
1493337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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