View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-7 (Length: 741)
Name: NF1320R-Insertion-7
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 460 - 720
Target Start/End: Original strand, 108504 - 108764
Alignment:
| Q |
460 |
tggcttgattgtaagcaaataagtatacaagagagacacagtgtacaaattgtcccaaaaattagcctaataaatgagaacaagaagatgtgaggagata |
559 |
Q |
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| T |
108504 |
tggcttgattgtaatcaaataagtatacaagagagacacagtgtacaaattgtcccaaaaattagcctaataaatgagaacaagaagatgtgaggagata |
108603 |
T |
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| Q |
560 |
tatctctttttccatacttgtttttgacgatccatctaatgcaaacgaagatttacatatcccgagtcttttggcaaagtttaagtttgacctaacggtg |
659 |
Q |
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| T |
108604 |
tatctctttttccatacttgtttttgacgatccatctaatgcaaacgaagatttacatatcccgagtcttttggcaaagtttaagtttgacctaacggtg |
108703 |
T |
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| Q |
660 |
gacgaattccagtctcagttttatggctatgagttctgacaaaaaagagagttgctttcac |
720 |
Q |
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| T |
108704 |
gacgaattccagtctcagttttatggctatgagttctgacaaaaaagagagttgctttcac |
108764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 107918 - 108369
Alignment:
| Q |
9 |
caaatagtgtgattatatacggcttcttcaactactagttgtgagtcaagtatgcaacattcaaccccaaactttgaatccacctaaacacataaaattc |
108 |
Q |
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| T |
107918 |
caaatagtgtgattatatacggcttc---aactactagttgtgagtcaagtatacaacattcaaccccaaactttgaatccacctaaacacataaaattc |
108014 |
T |
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| Q |
109 |
caaggctctcctttgctaaccagaagaatcggagtggactagtaagtgaaatcaagtaatgaatgatattggtacaacttttttgacaatannnnnnnnn |
208 |
Q |
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| T |
108015 |
caagtctctcctttgctaaccagaagaatcggagtggactagtaagtgaaatcaagt----aatgatattggtacaacttttttgacaatattttttttt |
108110 |
T |
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| Q |
209 |
c-ttctaaagagaataagaacataa-------------------tatctacaaattggcacaaaatgttaaatattatttctcaagtgaaacattcatca |
288 |
Q |
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| T |
108111 |
ctttctaaagagaataaaaacataatatgagtatgagagataattatctaaaaattgacacaaaatgttaaatattatttctcaagtgaaacattcatca |
108210 |
T |
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| Q |
289 |
tagaaaatccaaagtttctacttgctgtgcacgagtgaatacgcttttgctggactcca--------------------tttctcctgtttaactatgta |
368 |
Q |
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| T |
108211 |
tagaaaatccaaagtttctacttgctgtgcacgagtgaatacgcttttactggactccattctgattatcacagacgcctttctcctgtttaactatgta |
108310 |
T |
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| Q |
369 |
tgaagtatatttcgatggggaattaacacataaaaacaaagcaattatgtacggtggaaaca |
430 |
Q |
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| T |
108311 |
tgaagtatatttcgatggggaattaacacataaaaacaaagca---atgtacggtggaaaca |
108369 |
T |
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