View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-9 (Length: 680)
Name: NF1320R-Insertion-9
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 9 - 680
Target Start/End: Original strand, 36289426 - 36290095
Alignment:
| Q |
9 |
attagtttcccagttttgatgtcaggttgtaatgttagcatgaaaatgataacataaatatatatatgtcttcaaatacagttgatgggaagaaaaagac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
36289426 |
attagtttcccagttttgatgtcaggttgtaatgttagcatgaaaatgataacataaatat--atatgtcttcaaatacaggtgatgggaagaaaaagac |
36289523 |
T |
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| Q |
109 |
caaaattgggataatattaggtgttgtcgcggggattatctgccttggaatctttgtatggcttctatgtaggtctaagggaaaactcaaaggtaatatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36289524 |
caaaattgggataatattaggtgttgtcgcggggattatctgccttggaatctttgtatggcttctatgtaggtttaagggaaaactcaaaggtaatatt |
36289623 |
T |
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| Q |
209 |
tatttcctaaagtttattattttgtctttgatgaatcactaggtattgcatgctgtttctcaatgttgacttgtataactctattccttttctattttcc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289624 |
tatttcctaaagtttattattttgtctttgatgaatcactaggtattacatgctgtttctcaatgttgacttgtataactctattccttttctattttcc |
36289723 |
T |
|
| Q |
309 |
cacagtttcctcaacttcttctacttccaacattaatggtgatgtaccagtttctaaaccaaccaagagtggaaacttatcagcaggattttcaggatca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289724 |
cacagtttcctcaacttcttctacttccaacattaatggtgatgtaccagtttctaaaccaaccaagagtggaaacttatcagcaggattttcaggatca |
36289823 |
T |
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| Q |
409 |
attgatcttcacttagacgggagctctataaataatgcagaactttcactcttcaattttggtagcattataattgcaacaaacaatttctcagaagaaa |
508 |
Q |
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| T |
36289824 |
attgatcttcacttagacgggagctctataaataatgcagaactttcactcttcaattttagtagcattataattgcaacaaacaatttctcagaagaaa |
36289923 |
T |
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| Q |
509 |
acaagcttggacaagggggatttggtcctgtctacaaggtaaacatgtagctgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaa |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289924 |
acaagcttggacaagggggatttggtcctgtctacaaggtaaacatgtaactgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaa |
36290023 |
T |
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| Q |
609 |
atgtaacactcatttttaatttggtcctgattcaaaatgtaattatatcttcagattattatggtcaatgta |
680 |
Q |
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| T |
36290024 |
atgtaacactcatttttaatttggtcctgattcaaaatgtaattatattttcagattattatggtcaatgta |
36290095 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 550
Target Start/End: Original strand, 21935833 - 21935876
Alignment:
| Q |
507 |
aaacaagcttggacaagggggatttggtcctgtctacaaggtaa |
550 |
Q |
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| T |
21935833 |
aaacaagcttggacaaggtgggtttggtcctgtctacaaggtaa |
21935876 |
T |
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