View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_1 (Length: 842)
Name: NF1320_high_1
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 30 - 831
Target Start/End: Complemental strand, 34015449 - 34014626
Alignment:
| Q |
30 |
atatgtttatgcaattatgaaaatgaggggataaaataatataaagaccatttactactcacttgcatatcattatgtacatcagtttcttacagcttca |
129 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34015449 |
atatgtttatgcaattgtaaaaatgaggggacaaaataataataaaaccctttactactcacttgcatatcattatgtacatcagtttcttatagcttca |
34015350 |
T |
|
| Q |
130 |
atttattaacagttacca------gtcacttgatac------atggcctggactagcatttttaactatgtattatcttctataatattaaatcgcagtc |
217 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
34015349 |
atttattaacagttaccactaccagtcacttgatacctatacatggcctggactagcatttttaactatgtattatcttctataatattaaatcgcgggc |
34015250 |
T |
|
| Q |
218 |
cgcaaatgcaatatagatgattttgatgtcttcgcaactgaatcacaaccgcaattttgatcgcattggctgcattttcatgcaatataaatgttcacaa |
317 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015249 |
cgtaaatgcaatatagatgattttgaggtcttcgcaactgaattacaaccgcaatttcgatcgcattggctgcattttcatgcaatataaatgttcacaa |
34015150 |
T |
|
| Q |
318 |
tgtaaccgcaaccgcgac-acaattccat------ctatcat---ttagaagaaacttcagaagcacaactagtaatagacacatcacttgtggtagaaa |
407 |
Q |
| |
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||| ||| |||| |||| ||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015149 |
cgtacccgtaaccacgaccacaattcaataccatgctatcatcatttggaagaaacttcagaagcacaactagtaatagacacatcacttgtggtagaaa |
34015050 |
T |
|
| Q |
408 |
caagagccctttgttgcaaatgtctcaaactttgttccatactaacttgaaccatttcatctaacatcttctttgctttacccaattgttcatcacaatc |
507 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |
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| T |
34015049 |
ctagagccctttgttgtaaatgtctcaaactttgttccatactaacttgaaccatttcatctaacattttctttgctttaccaaattgttcatcaccatc |
34014950 |
T |
|
| Q |
508 |
aatctgagatataatatcatacactatgttctcaagagtctcaccttcaatttcacatcttgtttcaacatcagaatctcttagtagctgcaaaagtgta |
607 |
Q |
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| T |
34014949 |
aatctgagatataatatcatacactatgttctcaagagtctcaccttcaatttcacatcttgtttcaacatcagaatctcttagtagctgcaaaagtgta |
34014850 |
T |
|
| Q |
608 |
catgattttgccttagattttgttgttccttgaacagttagttcaagaagtcctggaataacaccttctcttaaaattggttccctatatttacacctat |
707 |
Q |
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| T |
34014849 |
catgattttgccttagactttgttgttccttgaacagttagttcaagaagtcctggaattacaccttcgcttaaaattggttccctatatttacacctat |
34014750 |
T |
|
| Q |
708 |
ctctttgacacattctcaacaatgttccaacagcatgttctttactttgtggatttccatattcaagaacttcaactactgcaagaacaccgccttcttc |
807 |
Q |
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| T |
34014749 |
cactttgacacattctcaacaatgttccaacagcatgttctttactttgtggatttccattttcaagaacttcaactactgcaagaacaccgccttcttc |
34014650 |
T |
|
| Q |
808 |
cgatgttaacgaaactattccttc |
831 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
34014649 |
cgatgttaatgaaactattccttc |
34014626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 357 - 813
Target Start/End: Complemental strand, 30298863 - 30298410
Alignment:
| Q |
357 |
aagaaacttcagaagcacaactagtaatagacacatcacttgtggtagaaacaagagccctttgttgcaaatgtctcaaactttgttccatactaacttg |
456 |
Q |
| |
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||||||||||||||||||| | || |||| | |||||||| ||| | || || |||||||| || ||||| |||| |||||||||||| || ||||| |
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| T |
30298863 |
aagaaacttcagaagcacagccagctatagggagatcacttggggtgcatacgagtgccctttgctgtaaatgcctcagactttgttccatgctgacttg |
30298764 |
T |
|
| Q |
457 |
aaccatttcatctaacatcttctttgctttacccaattgttcatcacaatcaatctgagatataatatcatacactatgttctcaagagtctcaccttca |
556 |
Q |
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| T |
30298763 |
aaccatctcagctagcatcttctttgctttaccagattgatcatccccgtcaatctgagatatgatgttgcatactatattctcaagagtgtccggttgg |
30298664 |
T |
|
| Q |
557 |
atttcacatcttgtttcaacatcagaatctcttagtagctgcaaaagtgtacatgattttgccttagattttgttgttccttgaacagttagttcaagaa |
656 |
Q |
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|||||| |||||| | | | || ||||||||||| |||||||| || | | ||||| | ||| || | ||||||||||||||| || ||||| | |
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| T |
30298663 |
atttcagatcttggataagga---gattctcttagtagttgcaaaagggtgcgcgcttttgtttgagacttcggtgttccttgaacagtgagctcaagta |
30298567 |
T |
|
| Q |
657 |
gtcctggaataacaccttctcttaaaattggttccctatatttacacctatctctttgacacattctcaacaatgttccaacagcatgttctttactttg |
756 |
Q |
| |
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|||||||||| ||||||||||| | ||| |||||||| |||||||| | ||| ||||| |||||| |||| | |||||||||||||||||| ||||||| |
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| T |
30298566 |
gtcctggaatgacaccttctctaagaatcggttccctgtatttacatcgatcgctttggcacattgtcaatagtgttccaacagcatgttccctactttg |
30298467 |
T |
|
| Q |
757 |
tggatttccatattcaagaacttcaactactgcaagaacaccgccttcttccgatgt |
813 |
Q |
| |
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|| | || | ||| ||||| || || |||||||||| ||| ||||| || ||||| |
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| T |
30298466 |
gagagtgccgttttcgagaacctccacaactgcaagaataccaccttcctcggatgt |
30298410 |
T |
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