View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_17 (Length: 486)
Name: NF1320_high_17
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Complemental strand, 2151565 - 2151114
Alignment:
| Q |
6 |
agcaccacagacttacgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggaccaagagaatatgtactagagttttttgaa |
105 |
Q |
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||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151565 |
agcaccagaaacttatgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggaccaagagaatatgtactagagttttttgaa |
2151466 |
T |
|
| Q |
106 |
tcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagtatgaatgtcattcactataagtcttcctttgaaaaatattgttt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2151465 |
tcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagtatgaatgtcattcactataagtcttcctttgaaaaatattgtgt |
2151366 |
T |
|
| Q |
206 |
cttgtgtttttcaataaatttatagttannnnnnnncttcctaatgtaatgcaataggtgacatcaagaaaagatcaatggcaatattgggctcgtgaag |
305 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151365 |
cttgtgtttttcaataaatttatagtttttttttttcttcctaatgtaatgcaataggtgacatcaagaaaagatcaatggcaatattgggctcgtgaag |
2151266 |
T |
|
| Q |
306 |
atgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccatttga |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2151265 |
atgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacataggcaaacaacttggagaagagctggccgatccatttga |
2151166 |
T |
|
| Q |
406 |
caagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaac |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151165 |
caagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaac |
2151114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 2163839 - 2163680
Alignment:
| Q |
6 |
agcaccacagacttacgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggaccaagagaatatgtactagagttttttgaa |
105 |
Q |
| |
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||||||| | ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
2163839 |
agcaccagaaacttatgaattatttgatgatataatactgctcacagatggacaaattgtgtatcaaggaccaagagaaaatgtactagagtttttcgag |
2163740 |
T |
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| Q |
106 |
tcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagtatga |
165 |
Q |
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|| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2163739 |
tcaatgggattcaagtgtcctgaaagaaaaggagttgctgatttcttacaagaagtatga |
2163680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 447
Target Start/End: Complemental strand, 2163595 - 2163402
Alignment:
| Q |
254 |
atgcaataggtgacatcaagaaaagatcaatggcaatattgggctcgtgaagatgaaccttataactttgtcactgtcaaggattttgctcgagccttcg |
353 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||| ||| || |
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| T |
2163595 |
atgcaataggttacatcaagaaaagatcaatggcaatattgggcaaataaagatgaaccttatagttttgttactgtcaaggattttgccgaagcatttc |
2163496 |
T |
|
| Q |
354 |
aattatttcacgtaggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaata |
447 |
Q |
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| |||||||| |||| || |||||||||| ||||| ||| |||| ||||||||||| |||| ||| ||| |||||||| |||||||||||| |
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| T |
2163495 |
agatatttcacataggtcaaaaacttggagatgagctagccaatccttttgacaagtcgaaatgccatgcaagtgtcttgaccacaaagaaata |
2163402 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 42156709 - 42156605
Alignment:
| Q |
58 |
caaattgtgtatcaaggaccaagagaatatgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaag |
157 |
Q |
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|||||||| |||||||||||| | || | ||||||||||| ||||||| |||||||| | |||||| || |||||||| |||||||||||||||||| |
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| T |
42156709 |
caaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctgagagaaaagggattgctgatttcttacaag |
42156610 |
T |
|
| Q |
158 |
aagta |
162 |
Q |
| |
|
||||| |
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| T |
42156609 |
aagta |
42156605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 4302471 - 4302546
Alignment:
| Q |
375 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgg |
450 |
Q |
| |
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|||||||||| ||||| ||| |||| ||||| || ||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
4302471 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatgg |
4302546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 42144734 - 42144658
Alignment:
| Q |
86 |
atgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagta |
162 |
Q |
| |
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|||| |||||||| || |||| ||||| || | |||||| || |||||||| |||||||||||||||||||||||| |
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|
| T |
42144734 |
atgtgctagagttcttcgaatacacaggctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagta |
42144658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 4302310 - 4302384
Alignment:
| Q |
16 |
acttacgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggaccaagagaatatgta |
90 |
Q |
| |
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||||| ||| |||| |||||||| ||| | || || ||||||||||||||||||||||| |||||| || ||||| |
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| T |
4302310 |
acttatgaattattcgatgatatcatattgcttacagatggacaaattgtgtatcaaggcccaagaaaaaatgta |
4302384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 42135629 - 42135525
Alignment:
| Q |
58 |
caaattgtgtatcaaggaccaagagaatatgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaag |
157 |
Q |
| |
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|||||||| || ||||||||| | ||| |||| || ||||||||||| | | |||||||| ||||| ||||||||| || |||||||| ||||||| |
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| T |
42135629 |
caaattgtataccaaggaccacgcgaaaatgtgttacagttttttgaaaccatcggtttcaaatgtcctccaagaaaaggagtagctgattttttacaag |
42135530 |
T |
|
| Q |
158 |
aagta |
162 |
Q |
| |
|
||||| |
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|
| T |
42135529 |
aagta |
42135525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 2874330 - 2874486
Alignment:
| Q |
6 |
agcaccacagacttacgaactatttgatgatataatacttctcactgatggacaaattgtgtatcaaggaccaagagaatatgtactagagttttttgaa |
105 |
Q |
| |
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||||||| ||||||| ||||| |||||||| || || ||| | ||||||| ||||||| || |||||||| | ||| |||| || || ||||||||| |
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| T |
2874330 |
agcaccagagacttatgaactttttgatgacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgttcttgaattttttgaa |
2874429 |
T |
|
| Q |
106 |
tcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagta |
162 |
Q |
| |
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|| | |||||||| ||||| || || |||||||||||||||||| | ||||||||| |
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|
| T |
2874430 |
tctattggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagta |
2874486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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