View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_high_24 (Length: 428)
Name: NF1320_high_24
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_24 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 47 - 399
Target Start/End: Complemental strand, 33701890 - 33701541
Alignment:
| Q |
47 |
tatactgcatagagattgttatatatgtacaagaccaatgattaaatttcacgaatcataataaagagttaacagatctttcagatgagtttaagtatta |
146 |
Q |
| |
|
||||||||||| ||| |||||||| |||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
33701890 |
tatactgcataaagactgttatatgtgtaga-gagcaatgattaaatttcacgaatcataataaagagttaacaaatctttcaggtgagtttaagtattc |
33701792 |
T |
|
| Q |
147 |
agattgactaaccatgataatattacgtagtaagttatataaattgtttcatgtgcatctnnnnnnncatttttatcattttcatcttccttaacactag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33701791 |
-gattgactaaccatgataatattacgtagtaagttatataaactgtttcatgtgcatctaaaaaa-catttttatcattttcatcttccttaacactag |
33701694 |
T |
|
| Q |
247 |
actttctcaatatannnnnnnnncgtttctctttctatagtcacaatctatgcaacgaaacccatcctaatccaaaatttaacaagatcaaaattctata |
346 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33701693 |
actttctcaatatttttttttttcgtttctctttctatagtcacaatctatgcaacgaaacccatcctaatccaaaatttaacaagatcaaaattctata |
33701594 |
T |
|
| Q |
347 |
gaatagaaattctaaacaccaagacatataaaacactagaaacatgaggagga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33701593 |
gaatagaaattctaaacaccaagacatataaaacactagaaacatgagcagga |
33701541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 21267112 - 21266989
Alignment:
| Q |
274 |
tctctttctatagtcacaatctatgcaacgaa--acccatcctaatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaagac |
371 |
Q |
| |
|
||||||||| | | |||||||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||| |||||| ||||||| ||||||| ||| |
|
|
| T |
21267112 |
tctctttctcttgccacaatctatgcaatgaagtccccatattaatccaaaagttaacaaattcaaagttctaaagaatataaattctcaacaccatgac |
21267013 |
T |
|
| Q |
372 |
atataaaac-actagaaacatgag |
394 |
Q |
| |
|
|||| |||| |||||||||||||| |
|
|
| T |
21267012 |
atatcaaacaactagaaacatgag |
21266989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 33714872 - 33714809
Alignment:
| Q |
307 |
cccatcctaatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaaga |
370 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||| |||||||||| ||| |||||||||| |
|
|
| T |
33714872 |
cccatcctaatctaaaatttaacaaattcaaagttctaaagaatagaaaatctcaacaccaaga |
33714809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 21136735 - 21136654
Alignment:
| Q |
314 |
taatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaagacatataaaac-actagaaacatgag |
394 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||| ||||||| |||||||| |||||| |||| || ||||||||||| |
|
|
| T |
21136735 |
taatccaaaatttaacaaattcaaagttctgaagaatataaattctcaacaccaatacatatcaaacaaccagaaacatgag |
21136654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 12812 - 12757
Alignment:
| Q |
314 |
taatccaaaatttaacaagatcaaaattctatagaatagaaattctaaacaccaag |
369 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||| ||||||| |||| |||| |
|
|
| T |
12812 |
taatccaaaatttaacaagttcaaagttctaaagaatacaaattctcaacatcaag |
12757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 47213 - 47250
Alignment:
| Q |
294 |
ctatgcaacgaaacccatcctaatccaaaatttaacaa |
331 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
47213 |
ctatgtaacgaaacccatcttaatccaaaatttaacaa |
47250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University