View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_35 (Length: 380)
Name: NF1320_high_35
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 3176435 - 3176772
Alignment:
| Q |
30 |
acaacaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaataatcttgcaggatcc |
129 |
Q |
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| T |
3176435 |
acaacaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaataatcttgcaggatcc |
3176534 |
T |
|
| Q |
130 |
ttttctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacacttctgtttctcatgc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176535 |
ttttctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacacttctgtttctcatgc |
3176634 |
T |
|
| Q |
230 |
cgctgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgtgccgcatacaaattgtggaaggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3176635 |
cgctgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgcgccgcatacaaattgtggaaggt |
3176734 |
T |
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| Q |
330 |
tgacaagcttgatttcttagcttgtgtgtgctccttct |
367 |
Q |
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| T |
3176735 |
tgacaagcttgatttcttagcttgtgtgtgctccttct |
3176772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 365
Target Start/End: Complemental strand, 44010895 - 44010647
Alignment:
| Q |
117 |
tcttgcaggatccttttctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacactt |
216 |
Q |
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||||||||||||||||||||| || || |||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||| ||||| ||| |
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| T |
44010895 |
tcttgcaggatccttttctcggtcggctgttaactacaatgctggagcacagacggcggtttctaatataatcatggcttcagctgttctagtgaccctt |
44010796 |
T |
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| Q |
217 |
ctgtttctcatgccgctgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgtgccgcataca |
316 |
Q |
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||||||||||||| || ||||| || |||||||| || ||||||||| ||||||| || |||| || || || ||||| ||||| | || ||||| | |
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| T |
44010795 |
ttgtttctcatgcctctcttctactatacaccaaatgtagtcttagcaaccatcattattgctgctgtgattggactaatagattatcaagcggcatata |
44010696 |
T |
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| Q |
317 |
aattgtggaaggttgacaagcttgatttcttagcttgtgtgtgctcctt |
365 |
Q |
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|| |||||||||||||||| ||||||||||| || || |||||||||| |
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| T |
44010695 |
aactgtggaaggttgacaaacttgatttcttggcctgcatgtgctcctt |
44010647 |
T |
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