View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_high_37 (Length: 375)
Name: NF1320_high_37
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 45317713 - 45318054
Alignment:
| Q |
6 |
agtgagatgaatgatatggcttggagcttttgtgggtggagttggaaagagaacaagttgtttgagctggctttagcaatggtagatgagaaacacccgg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45317713 |
agtgagatgaatgatatggcttggagcttttgtgggtggagttggaaagagaacaagttgtttgagctggctttagcaatggtagatgagaaacacccgg |
45317812 |
T |
|
| Q |
106 |
aacgatgggaggtagtagcagccatggttggaggtgataagagtgcaggggacgttcaagagcattatgtgatccttcttgaggacttgcatgttataga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45317813 |
aacgatgggaggtagtagcagccatggttggaggtgataagagtgcaggggacgttcaagagcattatgtgatccttcttgaggacttgcatgttataga |
45317912 |
T |
|
| Q |
206 |
atctggaaaagtggatcataaacttggaggaattcagcctaaggaagagtctttgtgcttaccnnnnnnnnnnnnnnnnnnnntcaagcttgtaagccca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45317913 |
atctggaaaagtggatcataaacttggaggaattcagcctaaggaagagtctttgtgcttacctgatgatgatgaatgatgattcaagcttgtaagccca |
45318012 |
T |
|
| Q |
306 |
ttttatttaggtctcttggaatatatggttattgtaacatgt |
347 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45318013 |
ttttatttaggtctcttggaatatattgttattgtaacatgt |
45318054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 38579455 - 38579264
Alignment:
| Q |
36 |
tgtgggtggagttggaaagagaacaagttgtttgagctggctttagcaatggtagatgagaaacacccggaacgatgggaggtagtagcagccatggttg |
135 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||| || || ||| | |||||| | || ||||| ||||||| |
|
|
| T |
38579455 |
tgtgggtggagttggaaggagaacaaattgtttgagctagctttagctttagtagatgagagtcatccagaaaggtgggagatggttgcagctatggttg |
38579356 |
T |
|
| Q |
136 |
gaggtgataagagtgcaggggacgttcaagagcattatgtgatccttcttgaggacttgcatgttatagaatctggaaaagtggatcataaa |
227 |
Q |
| |
|
||||||| || ||||||||||| |||||| ||||||||||||| ||| | ||||| ||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
38579355 |
gaggtgaaaaaagtgcaggggaggttcaaaagcattatgtgatacttttggaggatttggagcttatagaatctggaaaatttgatcataaa |
38579264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University