View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_38 (Length: 365)
Name: NF1320_high_38
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 28638207 - 28638541
Alignment:
| Q |
29 |
aattatgccatcaaaaagctactttctctcaactaaccaacattttgtttcctttagcaaacttctctcattttttgtaatcagtttctcacctctaata |
128 |
Q |
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| T |
28638207 |
aattatgccatcaaaaagctactttctctcaactaaccaacattttgtttcctttagcaaacctctctcattttttgtaatcagtttctcacctcaaata |
28638306 |
T |
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| Q |
129 |
gcatctctaataaagaacttaaacaatttttcactctaacaatacaactctcttaaaaaatcaaaattagctcaaaagttatcacatattttggttggt- |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28638307 |
gcatctctaataaagaacttaaacaatttttcactctaacaatacaactctcctaaaaaatcaaaattagctcaaaagttatcacatattttggttggtt |
28638406 |
T |
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| Q |
228 |
----taagaactaaatccatgtcacaaaacaaaacctagttaacaactgctattagaaatggaagaaagacttaccagttctgatatgttccgatcaatc |
323 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28638407 |
aagataagaactaaatccatgtcacaaaacaaaacctaattaacaactgctattagaaatggaagaaagacttaccagttctgatatgttccgatcaatc |
28638506 |
T |
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| Q |
324 |
cgcgttcataaacgacaccaagtgtgttcatctca |
358 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
28638507 |
cgcgttcataaacgacaccaagtgtgttgatctca |
28638541 |
T |
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