View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_4 (Length: 630)
Name: NF1320_high_4
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 26562293 - 26561756
Alignment:
| Q |
19 |
ctttcatttctctattggtattgtggtccaattctcaaagctatgggtcaggctgaagaaatagcacaagaaggtcaaatatttgctcatggattaattc |
118 |
Q |
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| T |
26562293 |
ctttcatttctctattggtattgtggtccaattctcaaagctatgggtcaggctgaagaaatagcacaagaaggtcaaatatttgctcatggattaattc |
26562194 |
T |
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| Q |
119 |
ctcaactatatgcacttgcattgagttaccctatgcaaagattcctccaagctcaaaacatagttaaccctcttgcatacatggtgtttggagtgttttg |
218 |
Q |
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| T |
26562193 |
ctcaactatatgcacttgcattgagttaccctatgcaaagattcctccaagctcaaaacatagttaaccctcttgcatacatggtgtttggagtgttttg |
26562094 |
T |
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| Q |
219 |
cttgcacatattactcaattgggttgtgatttatgttttgggctatggagtttttgaagctgctttgacactcagtttttcttggtgggtttttgcatta |
318 |
Q |
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| T |
26562093 |
cttgcacatattactcaattgggttgtgatttatgttttgggctatggagtttttgaagctgctttgactctcagtttttcttggtgggtttttgcatta |
26561994 |
T |
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| Q |
319 |
atgaatggactttatattcttctaagtccatcttgtaaggaaagttggacaggtttctctaggagagctttcatagggatatggccttatttcaagatca |
418 |
Q |
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| T |
26561993 |
atgaatggattttatattcttctaagtccatcttgtaaggaaagttggacaggtttctctaggagagctttcatagggatatggccttatttcaagatca |
26561894 |
T |
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| Q |
419 |
ctattgcttctgctgttatgttgtggtatgcatctctc--tctcacctatttgtccactattcattttgtaaataataacaatataatacaccgtcatct |
516 |
Q |
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| T |
26561893 |
ctattgcttctgctgttatgttgtggtatgcatctctctctctcaccaatttgtccactattcattttgtaaataataacaatataatacaccgtcattt |
26561794 |
T |
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| Q |
517 |
tcttttttataaaagatacatttaggtccataaaaatt |
554 |
Q |
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| T |
26561793 |
tcttttttataaaagatacatttaggtccataaaaatt |
26561756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 26564207 - 26564172
Alignment:
| Q |
457 |
tctcacctatttgtccactattcattttgtaaataa |
492 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
26564207 |
tctcacctatttgtacactattcattttgtaaataa |
26564172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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