View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320_high_47 (Length: 302)

Name: NF1320_high_47
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320_high_47
NF1320_high_47
[»] chr4 (12 HSPs)
chr4 (66-252)||(4218438-4218624)
chr4 (68-252)||(3801383-3801567)
chr4 (68-235)||(4009793-4009960)
chr4 (77-252)||(4002105-4002280)
chr4 (77-235)||(4025032-4025190)
chr4 (70-231)||(3919908-3920069)
chr4 (68-231)||(3817393-3817556)
chr4 (68-229)||(3986792-3986953)
chr4 (74-166)||(3955723-3955815)
chr4 (68-231)||(3933132-3933295)
chr4 (68-231)||(3809813-3809976)
chr4 (194-252)||(3954550-3954608)
[»] chr5 (1 HSPs)
chr5 (67-243)||(13397746-13397922)
[»] chr8 (2 HSPs)
chr8 (192-224)||(7030801-7030833)
chr8 (98-162)||(7081381-7081445)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 4218438 - 4218624
Alignment:
Q  66 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaata 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  4218438 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagatgttacaatgattctactatcggatcgaaaccaatcaagagttccaaata 4218537  T
Q  166 acatccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatattattcgaca 252  Q
    |||||  ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  4218538 acatctctagcagaccttcttccttaatatcatcaagaacaataagaaccttcatacggtcaatccttctatgaatattattagaca 4218624  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 3801383 - 3801567
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3801383 atcatcgtcatacacttcattaggaataagtacttgcttatctctacttgttacaattattctactatcagattgaaaccaatcaagagttccaaataac 3801482  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatattattcgaca 252  Q
    |||  ||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3801483 atctctagcagaccttcttccttaatatcatcaagatcaataagaaccttcatacggccaatccttctatgaatattattagaca 3801567  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 4009793 - 4009960
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||    
T  4009793 atcatcatcttcaacttcattagcaataagtacttgcttatctctagttgttaaaattattctactatcggatcgaaaccaatcaagagttctaaataac 4009892  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 235  Q
    |||  |||| || ||| ||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  4009893 atctctagctgaccttcttccttaacatcatcaagaacaataagaaccttcatacgaccaatccttct 4009960  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 4002105 - 4002280
Alignment:
Q  77 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 176  Q
    |||||||||||||| ||||||||||||||| ||||||||  |||||||||| |||||||| ||| |||||||||||||||||||||||||||||  ||      
T  4002105 atcaacttcattagtaataagtacttgcttgtctctagtcgttacaattatcctactatcggatcgaaaccaatcaagagttccaaataacatctctatt 4002204  T
Q  177 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatattattcgaca 252  Q
     || ||| ||||| || ||||||||||||||||||||||||||||||||||||| | || ||||||| ||| ||||    
T  4002205 tgaccttcttccttaacatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatataattagaca 4002280  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 4025032 - 4025190
Alignment:
Q  77 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 176  Q
    |||||||||||||  ||||||||||||| | ||||||||| | |||||||| |||||||||||| ||| ||||||||| |||||||||||||||  || |    
T  4025032 atcaacttcattacaaataagtacttgcatgtctctagttgtgacaattatcctactatcagatagaagccaatcaagtgttccaaataacatctctatc 4025131  T
Q  177 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 235  Q
     || ||| ||||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  4025132 tgaccttcttccttaacgtcatcaagaacaataaggaccttcatacggccaatccttct 4025190  T

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Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 3920069 - 3919908
Alignment:
Q  70 catcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacat 169  Q
    |||||| ||||||||||||||   | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920069 catcatgatcaacttcattagtccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacat 3919970  T
Q  170 ccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 231  Q
    |   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3919969 ctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3919908  T

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Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 3817393 - 3817556
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    ||||||||| ||||||||||||    | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3817393 atcatcatcttcaacttcattattccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataac 3817492  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 231  Q
    |||   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3817493 atctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3817556  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 3986792 - 3986953
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  3986792 atcatcatcgtcaacttcattatcaaaaagtacttgcttatctctggctgttagaattattctactatctgattgaaaccagtcaagagtttcgaataac 3986891  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaat 229  Q
    |||  |||| ||||||  |||| || |||||||||||  |||||||||||||| || |||||    
T  3986892 atctctagctgatcttcgtccttaacatcatcaagaatgataagaaccttcatgcgtccaat 3986953  T

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Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 3955815 - 3955723
Alignment:
Q  74 atcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 166  Q
    ||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3955815 atcatcaacttcattagtaataagtacttgcttgtctctaattgttacaattattctactatcagatcgaaaccaatcaagagttccaaataa 3955723  T

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Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 3933295 - 3933132
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    |||||||| |||||||||||| | || ||| |||||||||| |||| |  |||||||||||||||||||  || ||||||||||||||| ||||||||||    
T  3933295 atcatcattatcaacttcattggtaacaagcacttgcttatttctactggttacaattattctactatctaatcgaaaccaatcaagagatccaaataac 3933196  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 231  Q
    |||  |||||||||| |||| |  | ||||||||||||||||||||| ||||| ||||| ||||    
T  3933195 atctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgcggccgatcc 3933132  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 3809813 - 3809976
Alignment:
Q  68 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 167  Q
    |||||| | |||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| ||||||||||||||  | ||||||||||     
T  3809813 atcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcatattgaaaccaatcacaacttccaaataat 3809912  T
Q  168 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 231  Q
     |    ||| ||||| |  |||  |  ||||||||||| |||||||||||||| ||||||||||    
T  3809913 ttttccagctgatctgtacccttgacgtcatcaagaacgataagaaccttcatgcggccaatcc 3809976  T

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Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 3954608 - 3954550
Alignment:
Q  194 atcatcaagaacaataagaaccttcatacggccaatccttctatgaatattattcgaca 252  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  3954608 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatattattagaca 3954550  T

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Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 13397746 - 13397922
Alignment:
Q  67 catcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 166  Q
    ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  13397746 catcatcatcaacaacttcattagcaataagtacttgcttatccctggttgttataattattctactatcagatcgaaaccaatcaagagttccaaataa 13397845  T
Q  167 catccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat 243  Q
    ||||   ||| || ||| ||||  || |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13397846 catctccagctgaccttcttccgtaacatcatcaagaacaataagaaccttcatatggccaatccttctctgaatat 13397922  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 7030833 - 7030801
Alignment:
Q  192 atatcatcaagaacaataagaaccttcatacgg 224  Q
    ||||| |||||||||||||||||||||||||||    
T  7030833 atatcgtcaagaacaataagaaccttcatacgg 7030801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 7081381 - 7081445
Alignment:
Q  98 tacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaa 162  Q
    ||||||||||||| ||||| ||||||| ||||||||| | | |  |||||||||||| |||||||    
T  7081381 tacttgcttatctttagttgttacaatgattctactacctgttccaaaccaatcaagtgttccaa 7081445  T

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