View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_48 (Length: 293)
Name: NF1320_high_48
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 94 - 287
Target Start/End: Complemental strand, 8577867 - 8577678
Alignment:
| Q |
94 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaatacaaattagtctattaaataaattaaagaaaat |
193 |
Q |
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| T |
8577867 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaatacaaattagtctattaaat----taaagaaaat |
8577772 |
T |
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| Q |
194 |
caatcaattgagtcacacagtcaaaatatctttttaataattatccatcaaaatcaatggaaacatatatattgatttgatttgtctctgctcc |
287 |
Q |
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| T |
8577771 |
caatgaattgagtcacacaatcaaaatatctttttaataattatccatcaaaattaatggaaacatatatattgatttgatttctctctactcc |
8577678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8577931 - 8577862
Alignment:
| Q |
1 |
tttaacaaaaagaaagcggctaatctagttgatagtaaattattaggacaaatatgaagtaatttgtaaa |
70 |
Q |
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| T |
8577931 |
tttaacaaaaagaaagcggctaaactagctgatagtaaattcttaggacaaatatgaagtaatttgtaaa |
8577862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 8603247 - 8603205
Alignment:
| Q |
118 |
aattgtaaagattgagcaatttagtcctttaaatttataaaat |
160 |
Q |
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| T |
8603247 |
aattgtaaagattgagcaatttagtcttttaaatatacaaaat |
8603205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 29086853 - 29086804
Alignment:
| Q |
112 |
cctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaata |
161 |
Q |
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| T |
29086853 |
cctcaaaattgtaatgatcgagcaatttagtcccttcaatttacaaaata |
29086804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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