View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_49 (Length: 274)
Name: NF1320_high_49
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 39378099 - 39377841
Alignment:
| Q |
1 |
tggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctactggttcaagtataatgtataaagctgttcttgaagat |
100 |
Q |
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| T |
39378099 |
tggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctactggttcaagtataatgtataaagctgttcttgaagat |
39378000 |
T |
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| Q |
101 |
ggaacttctttagcagttcgtagaattggtgaaaatggtgttgaaaggttcaaggattttgagaatcaagttcgggttatagctaaattagttcatccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39377999 |
ggaacttctttagcagttcgtagaattggtgaaaatggtgttgaaaggttcaaggattttgagaatcaagttcgggttatagctaaattagttcatccaa |
39377900 |
T |
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| Q |
201 |
atttagttagggttcgtggattttactggggacatgaagaaaaactcattatctatgat |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39377899 |
atttagttagggttcgtggattttactggggacatgaagaaaaactcattatctatgat |
39377841 |
T |
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