View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_50 (Length: 271)
Name: NF1320_high_50
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_50 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 33288247 - 33288008
Alignment:
| Q |
32 |
agctgttgcaatgtctttacacaagtccccccttcaagcccattttgtacctcttcctcaaaataagtaatcaccgacttcaccatcacttgattctccc |
131 |
Q |
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| T |
33288247 |
agctcttgcaatgtctttacacaagtccccccttcaagcccattttgcacctcttcctcaaaataagtaatcaccgacttcaccatcacttgattctcac |
33288148 |
T |
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| Q |
132 |
gcgcccgtctcaaacatttctcaagagaattacaaaactccaacgtctgaagactattatcaaaataatcattaaccaacgcgaacaaatccttgtttcc |
231 |
Q |
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| T |
33288147 |
gcgcccgtctcaaacatttctcaagagaattacaaaactccaacgtctgaagactattatcaaaataatcattaaccaacgcgaacaaatccttgtttcc |
33288048 |
T |
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| Q |
232 |
ccatatatccctcttacaatccaaaataactttaacaact |
271 |
Q |
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| T |
33288047 |
ccatatatccctcttacaatccaaaataactttaacaact |
33288008 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 7327990 - 7328130
Alignment:
| Q |
61 |
cccttcaagcccattttgtacctcttcctcaaaataagtaatcaccgacttcaccatcacttgattctcccgcgcccgtctcaaacatttctcaagagaa |
160 |
Q |
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| T |
7327990 |
cccttcaactccattttgaacctcttcatcaaaacaagtcattgcagacttaaccacaacaagtttttcacgcgctcgtttcaggcatttctcaagggca |
7328089 |
T |
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| Q |
161 |
ttacaaaactccaacgtctgaagactattatcaaaataatc |
201 |
Q |
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| T |
7328090 |
ttacaaaactccaatgtctgaagactattctcaaaaaaatc |
7328130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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