View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320_high_54 (Length: 264)

Name: NF1320_high_54
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320_high_54
NF1320_high_54
[»] chr5 (29 HSPs)
chr5 (12-235)||(14574166-14574385)
chr5 (130-177)||(19783649-19783696)
chr5 (123-179)||(8544996-8545052)
chr5 (130-178)||(35109399-35109447)
chr5 (133-176)||(31159430-31159473)
chr5 (126-179)||(12285612-12285665)
chr5 (130-178)||(16485977-16486025)
chr5 (123-179)||(36623181-36623237)
chr5 (128-184)||(40445976-40446032)
chr5 (116-179)||(13864342-13864405)
chr5 (119-158)||(17985248-17985287)
chr5 (116-179)||(18589867-18589930)
chr5 (120-179)||(22297383-22297442)
chr5 (127-166)||(25607069-25607108)
chr5 (117-179)||(32793041-32793104)
chr5 (131-177)||(1476125-1476171)
chr5 (128-178)||(6898020-6898070)
chr5 (130-179)||(21212067-21212117)
chr5 (127-177)||(22498942-22498992)
chr5 (130-172)||(32460016-32460058)
chr5 (131-176)||(5001556-5001601)
chr5 (116-153)||(18489076-18489113)
chr5 (131-184)||(30893926-30893979)
chr5 (116-153)||(39938782-39938819)
chr5 (108-184)||(781856-781932)
chr5 (116-184)||(6489000-6489068)
chr5 (116-184)||(7713525-7713593)
chr5 (127-179)||(13796328-13796380)
chr5 (131-179)||(23118066-23118114)
[»] chr4 (23 HSPs)
chr4 (128-178)||(19124634-19124684)
chr4 (116-178)||(38374956-38375018)
chr4 (129-178)||(11269693-11269742)
chr4 (130-178)||(7371562-7371610)
chr4 (108-184)||(31041357-31041433)
chr4 (117-184)||(29908049-29908116)
chr4 (116-164)||(11144665-11144713)
chr4 (122-178)||(18635529-18635585)
chr4 (116-179)||(13121542-13121605)
chr4 (108-179)||(18903750-18903821)
chr4 (137-184)||(24837494-24837541)
chr4 (116-179)||(34033331-34033394)
chr4 (130-185)||(36203228-36203283)
chr4 (134-177)||(40847085-40847128)
chr4 (116-179)||(49041981-49042044)
chr4 (119-184)||(5534503-5534568)
chr4 (129-178)||(43183006-43183055)
chr4 (123-179)||(6459931-6459987)
chr4 (130-186)||(7030907-7030963)
chr4 (127-179)||(7967636-7967688)
chr4 (131-179)||(41536920-41536968)
chr4 (130-178)||(42316838-42316886)
chr4 (130-178)||(53530008-53530056)
[»] chr3 (19 HSPs)
chr3 (123-184)||(7824800-7824861)
chr3 (119-179)||(9778807-9778867)
chr3 (116-171)||(1111841-1111896)
chr3 (115-153)||(2153500-2153538)
chr3 (128-186)||(11574244-11574302)
chr3 (117-179)||(27185475-27185537)
chr3 (117-179)||(35863814-35863876)
chr3 (129-186)||(1149082-1149139)
chr3 (123-184)||(7827501-7827562)
chr3 (117-178)||(21245792-21245853)
chr3 (131-184)||(23629760-23629813)
chr3 (131-184)||(43011315-43011368)
chr3 (134-179)||(44799073-44799118)
chr3 (131-179)||(5117206-5117254)
chr3 (108-184)||(8127456-8127532)
chr3 (131-179)||(29791774-29791822)
chr3 (129-177)||(38573586-38573634)
chr3 (119-179)||(49600267-49600327)
chr3 (116-184)||(51250233-51250301)
[»] scaffold0896 (1 HSPs)
scaffold0896 (108-179)||(3139-3209)
[»] chr7 (25 HSPs)
chr7 (116-183)||(48007547-48007614)
chr7 (127-179)||(45979111-45979163)
chr7 (127-176)||(7481226-7481275)
chr7 (127-179)||(5458082-5458134)
chr7 (115-171)||(32862081-32862137)
chr7 (124-179)||(429186-429241)
chr7 (114-177)||(6384851-6384914)
chr7 (131-178)||(32315222-32315269)
chr7 (131-178)||(38911298-38911345)
chr7 (123-178)||(48527189-48527244)
chr7 (123-177)||(1627942-1627996)
chr7 (116-170)||(4044605-4044659)
chr7 (118-184)||(5041332-5041398)
chr7 (128-178)||(35165532-35165582)
chr7 (127-177)||(37864425-37864475)
chr7 (131-184)||(3584197-3584250)
chr7 (116-153)||(3671848-3671885)
chr7 (117-178)||(41860259-41860320)
chr7 (131-179)||(8879762-8879810)
chr7 (133-177)||(10029842-10029886)
chr7 (117-153)||(16577861-16577897)
chr7 (117-153)||(16587765-16587801)
chr7 (108-184)||(30857241-30857317)
chr7 (131-171)||(45425459-45425499)
chr7 (138-178)||(47195574-47195614)
[»] chr6 (25 HSPs)
chr6 (108-179)||(7081646-7081717)
chr6 (108-179)||(8810638-8810708)
chr6 (128-184)||(12412270-12412326)
chr6 (116-179)||(13496114-13496177)
chr6 (127-175)||(334142-334190)
chr6 (130-178)||(4450261-4450309)
chr6 (116-176)||(21941459-21941519)
chr6 (116-184)||(28898849-28898917)
chr6 (116-184)||(29335575-29335643)
chr6 (130-184)||(5040847-5040901)
chr6 (117-179)||(17151234-17151296)
chr6 (130-188)||(18256872-18256930)
chr6 (134-179)||(404161-404206)
chr6 (116-185)||(788858-788927)
chr6 (116-153)||(2473627-2473664)
chr6 (137-178)||(6470637-6470678)
chr6 (123-184)||(8916481-8916542)
chr6 (131-184)||(15291705-15291758)
chr6 (131-179)||(331901-331949)
chr6 (109-153)||(1535327-1535371)
chr6 (117-177)||(2617206-2617266)
chr6 (130-178)||(8381208-8381256)
chr6 (127-179)||(12602023-12602075)
chr6 (117-153)||(17329979-17330015)
chr6 (116-172)||(21598962-21599018)
[»] chr1 (33 HSPs)
chr1 (130-179)||(29506825-29506874)
chr1 (108-179)||(31979427-31979498)
chr1 (118-179)||(563199-563260)
chr1 (117-178)||(32950762-32950823)
chr1 (128-177)||(34848476-34848525)
chr1 (116-184)||(42045372-42045440)
chr1 (108-152)||(42440140-42440184)
chr1 (127-179)||(44220985-44221037)
chr1 (115-178)||(17651379-17651442)
chr1 (128-179)||(26705598-26705649)
chr1 (127-177)||(12213993-12214043)
chr1 (118-184)||(16033452-16033518)
chr1 (130-176)||(23405372-23405418)
chr1 (134-184)||(30279638-30279688)
chr1 (131-177)||(43843891-43843937)
chr1 (128-177)||(28039872-28039921)
chr1 (108-153)||(29987104-29987149)
chr1 (131-176)||(30548106-30548151)
chr1 (133-178)||(47835732-47835777)
chr1 (130-179)||(49875613-49875662)
chr1 (127-184)||(52267757-52267814)
chr1 (133-184)||(1761454-1761506)
chr1 (127-175)||(4859085-4859133)
chr1 (130-177)||(10654461-10654509)
chr1 (116-156)||(11681244-11681284)
chr1 (131-179)||(16967209-16967257)
chr1 (130-178)||(19620575-19620623)
chr1 (131-179)||(24978242-24978290)
chr1 (130-178)||(31401667-31401715)
chr1 (117-153)||(47070872-47070908)
chr1 (130-178)||(47071972-47072020)
chr1 (130-186)||(49183164-49183220)
chr1 (116-184)||(52441511-52441579)
[»] chr8 (23 HSPs)
chr8 (131-179)||(17062354-17062402)
chr8 (131-179)||(17585956-17586004)
chr8 (108-175)||(29546895-29546962)
chr8 (123-177)||(6248301-6248355)
chr8 (130-179)||(1877676-1877725)
chr8 (116-184)||(29376894-29376962)
chr8 (116-184)||(29924917-29924985)
chr8 (117-179)||(2181126-2181188)
chr8 (123-153)||(9014684-9014714)
chr8 (118-184)||(27191751-27191817)
chr8 (118-184)||(29293170-29293236)
chr8 (117-179)||(32223880-32223942)
chr8 (131-177)||(36392837-36392883)
chr8 (116-186)||(36781399-36781469)
chr8 (118-151)||(10656441-10656474)
chr8 (130-179)||(11771705-11771754)
chr8 (118-179)||(27718896-27718957)
chr8 (131-180)||(30071531-30071580)
chr8 (127-184)||(39433403-39433460)
chr8 (116-185)||(39821876-39821945)
chr8 (116-184)||(6394757-6394825)
chr8 (116-176)||(9019564-9019624)
chr8 (131-179)||(28084280-28084328)
[»] chr2 (22 HSPs)
chr2 (122-177)||(16204823-16204878)
chr2 (116-179)||(34977202-34977265)
chr2 (131-179)||(40967386-40967434)
chr2 (135-178)||(10076873-10076916)
chr2 (131-178)||(37320532-37320579)
chr2 (128-171)||(42200693-42200736)
chr2 (127-177)||(24520650-24520700)
chr2 (102-171)||(3904208-3904277)
chr2 (108-153)||(23407010-23407055)
chr2 (123-184)||(33063979-33064040)
chr2 (127-179)||(2256969-2257021)
chr2 (132-184)||(5676732-5676784)
chr2 (116-184)||(7206118-7206186)
chr2 (123-179)||(7537108-7537164)
chr2 (115-179)||(10195661-10195725)
chr2 (131-179)||(20990919-20990967)
chr2 (127-187)||(27934868-27934928)
chr2 (116-184)||(29896294-29896362)
chr2 (119-179)||(35372942-35373002)
chr2 (110-174)||(40895858-40895922)
chr2 (128-184)||(42475122-42475178)
chr2 (132-184)||(44694681-44694733)
[»] scaffold0088 (1 HSPs)
scaffold0088 (123-179)||(48019-48075)
[»] scaffold0016 (1 HSPs)
scaffold0016 (118-179)||(99035-99096)
[»] scaffold0238 (1 HSPs)
scaffold0238 (130-178)||(25388-25436)
[»] scaffold0126 (1 HSPs)
scaffold0126 (130-178)||(34902-34950)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 14574166 - 14574385
Alignment:
Q  12 tgagatgaacaagaaagaggggattggtgaaaaataccttatttcatgtctatgtgtaattgatttagattacaaagcttttatagattatttttgggtg 111  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14574166 tgaggtgaacaagaaagagggggttggtgaaaaataccttatttcatgtctatgtgtaattgatttagattacaaagcttttatagattatttttgggtg 14574265  T
Q  112 gttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagagcttttatagacgtactaaactcat 211  Q
    | |||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| ||||||||| | || ||| |||| |||||||    |||||||||||    
T  14574266 gctagggtttaaaccccagaccttacatatattatatattgtacttaccaactgagttaagcttatgaagactgagcgtttatag----actaaactcat 14574361  T
Q  212 acaaaaaattctcatctttaaaat 235  Q
    ||||||||||||||||||||||||    
T  14574362 acaaaaaattctcatctttaaaat 14574385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 19783649 - 19783696
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  19783649 gaccttgcatatattatgtattgtctttatcaactaagttaagctcac 19783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 8544996 - 8545052
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  8544996 aactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacga 8545052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 35109447 - 35109399
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  35109447 gaccttgcatatattatgtattgtctttaccaactgagttaagctcacg 35109399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 31159473 - 31159430
Alignment:
Q  133 cttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  31159473 cttgcatatattatgtattgtctttatcaactgagttaagctca 31159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 12285612 - 12285665
Alignment:
Q  126 tccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||| |||||||||||||||| |||||| |||||||||| ||||||| ||||||    
T  12285612 tccaaaccttgcatatattatatattgtctttatcaactgagttaagttcacga 12285665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 16485977 - 16486025
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||||||    
T  16485977 gaccttgcatatattatgtattgtctttaccgacttagttaagctcacg 16486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 36623181 - 36623237
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||||||||||||||||||| ||| |  ||||||||| ||||||||||||||    
T  36623181 aactctagaccttgcatatattatgcattattcttatcaactgagttaagctcacga 36623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 40446032 - 40445976
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||||||| |||||  ||||||||| |||||| ||||||| ||||    
T  40446032 cagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 13864405 - 13864342
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| ||| || ||||||||||||||||||||||||   || ||||| ||||||||||||||    
T  13864405 gggtttgaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacga 13864342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 17985287 - 17985248
Alignment:
Q  119 tttaaactccagaccttgcatatattatgtattgtattta 158  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  17985287 tttaaacttcagaccttgcatatattatgtattgttttta 17985248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 18589867 - 18589930
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||| || |||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  18589867 gggtttaaaccccggaccttgcatatattatgcattgttcataccaactgagttaagctcacga 18589930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 22297442 - 22297383
Alignment:
Q  120 ttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||||||||||||||||||||||||  ||| ||||| || |||| ||||||    
T  22297442 ttaaaccccagaccttgcatatattatgtattgttcttaccaactgagctaaggtcacga 22297383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 25607069 - 25607108
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaa 166  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  25607069 ccagaccttgcatatattatgcattgtctttatcaactaa 25607108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 32793041 - 32793104
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtatt-gtatttatcaactaagttaagctcacga 179  Q
    ||||| |||||||||||||  |||||||||| ||| ||  ||||||||||||||||||||||||    
T  32793041 ggtttgaactccagaccttagatatattatgcatttgttcttatcaactaagttaagctcacga 32793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 1476125 - 1476171
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||| ||| | |||| ||||||||||||||||||    
T  1476125 accttgcatatattatgaattatttttaccaactaagttaagctcac 1476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 6898070 - 6898020
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||| |||||||||||||| ||| | |||| |||||||||||||||||||    
T  6898070 cagactttgcatatattatgcattatctttaccaactaagttaagctcacg 6898020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 21212067 - 21212117
Alignment:
Q  130 gaccttgcatata-ttatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  21212067 gaccttgcatataattatgtattgtccatatcaactaagttaagctcacga 21212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 22498992 - 22498942
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  22498992 ccagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 32460058 - 32460016
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaag 172  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  32460058 gaccttgtatatattatgtattgtctttatcaactgagttaag 32460016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 5001601 - 5001556
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    |||||||||||||||||||||||  ||||||||  |||||||||||    
T  5001601 accttgcatatattatgtattgtccttatcaaccgagttaagctca 5001556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 18489076 - 18489113
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  18489076 gggttcaaactccagaccttgcatatattatgcattgt 18489113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 30893979 - 30893926
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||||| ||||| ||||  |||| |||||||||||||| ||||    
T  30893979 accttgcatatattatgcattgtctttacaaactgagttaagctcacgaggaca 30893926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 39938819 - 39938782
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  39938819 gggtttaaacttcggaccttgcatatattatgtattgt 39938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 781932 - 781856
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||||||  ||| ||||||||||||||| ||||  |||||   |||||||| ||||||||||| |||||||    
T  781932 ggtggtcagggttcgaaccccagaccttgcatattttatacattgtccctatcaactgagttaagctcaagacgaca 781856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 6489068 - 6489000
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||| ||||||||||||||||||||| |||||   || ||||| || ||||||||||| ||||    
T  6489068 gggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 7713593 - 7713525
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||||||| ||||||||||||||||| ||| |   |||||||| |||||| ||||||| ||||    
T  7713593 gggtttgaactccaaaccttgcatatattatgcattattcatatcaactgagttaaactcacgaagaca 7713525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 13796380 - 13796328
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||| |||||   |||| ||| ||||||||||||||    
T  13796380 ccagaccttgcatatattatgcattgttcatatcgactgagttaagctcacga 13796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 23118066 - 23118114
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||||||||||| |||||  ||||||||| ||||||||||||||    
T  23118066 accttacatatattatgcattgtccttatcaactgagttaagctcacga 23118114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 19124634 - 19124684
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  19124634 cagaccttgcatatattatgtattgtctttatcaactgagttaagctcacg 19124684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 38375018 - 38374956
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||| ||||||||||||||||||||||||| |||||   || |||||||||||||||||||    
T  38375018 gggtttgaactccagaccttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 11269742 - 11269693
Alignment:
Q  129 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  11269742 agaccttgcatatattatgtattgtccttaccaactaagttaagctcacg 11269693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 7371562 - 7371610
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  7371562 gaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 31041357 - 31041433
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||| |||||||||||| ||||||||||||||||||||  ||||| | || ||| | |||||||||||||| ||||    
T  31041357 ggtggctagggtttaaaccccagaccttgcatatattatacattgtttctaccaaatgagttaagctcacgaggaca 31041433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 29908116 - 29908049
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||| |||||| |||||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  29908116 ggtttgaactccggaccttgcatatattatgcattgtccttaccaactgagttaagctcacgaagaca 29908049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 11144665 - 11144713
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaact 164  Q
    ||||| |||| ||||||||||||||||||||| ||||| ||||||||||    
T  11144665 gggttcaaaccccagaccttgcatatattatgcattgtctttatcaact 11144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 18635585 - 18635529
Alignment:
Q  122 aaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||| |||||||||| |||||||||| |||||  ||||||||| |||||||||||||    
T  18635585 aaaccccagaccttgtatatattatgcattgtccttatcaactgagttaagctcacg 18635529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 13121605 - 13121542
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||| |||||||||||||||||||| |||||   || |||||||| |||||||||||    
T  13121605 gggtttgaacttcagaccttgcatatattatgcattgtccctaccaactaagctaagctcacga 13121542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 18903750 - 18903821
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| ||||||| ||| ||||||||| ||||||||||| ||| | |||||||||| || ||| |||||||    
T  18903750 ggtggtcagggtttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactcacga 18903821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 24837494 - 24837541
Alignment:
Q  137 catatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||    
T  24837494 catatattatgtattgttcatatcaactaagttaagctcacgaggaca 24837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 34033394 - 34033331
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||||||| |||||||||||| ||||| || ||  ||||||||| ||||||||||||||    
T  34033394 gggttcaaactccggaccttgcatattttatgcatggttcttatcaactgagttaagctcacga 34033331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 36203283 - 36203228
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 185  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||| |||||    
T  36203283 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggacag 36203228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 40847085 - 40847128
Alignment:
Q  134 ttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||||||||||| | |||||||| ||||||||||||    
T  40847085 ttgcatatattatgtattgtctctatcaactgagttaagctcac 40847128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 49041981 - 49042044
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| ||| || |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  49041981 gggtttgaaccccggaccttgcatatattatgcattgtctatatcaactaggctaagctcacga 49042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 5534568 - 5534503
Alignment:
Q  119 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||| |||  ||||||||||||| ||||||  ||| ||||| |||||||||||||| ||||    
T  5534568 tttaaactcaagatattgcatatattatatattgttattaccaactgagttaagctcacgatgaca 5534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 43183006 - 43183055
Alignment:
Q  129 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||| ||||| |||||||||| || || |||||||    
T  43183006 agaccttgcatatattatgcattgtctttatcaactgagatatgctcacg 43183055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 6459931 - 6459987
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||| ||||||||||| |||||   |||||||| ||||||||||||||    
T  6459931 aactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacga 6459987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 7030907 - 7030963
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 186  Q
    |||||||||||| ||||| ||||| | || ||||| |||||||||||||| ||||||    
T  7030907 gaccttgcatattttatgcattgtctataccaactgagttaagctcacgaggacaga 7030963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 7967636 - 7967688
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||||||||||| ||| | ||||  |||||||||||||||||||    
T  7967636 ccagactttgcatatattatgcattatctttacgaactaagttaagctcacga 7967688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 41536968 - 41536920
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||||||||  ||||||| | |||||| |||||||    
T  41536968 accttgcatatattatgtattgtccttatcaattgagttaaactcacga 41536920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 42316838 - 42316886
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||| | ||| |||| ||||| |||||||||||||    
T  42316838 gaccttgcatatattatgcactgtctttaccaactgagttaagctcacg 42316886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 53530056 - 53530008
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||| ||||||||||| ||||| ||||| |||| |||||||||||||    
T  53530056 gaccttacatatattatgcattgtttttattaactgagttaagctcacg 53530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 7824861 - 7824800
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||    
T  7824861 aactccagaccttgcatatattatgtattgtctatatcaactgagttaaactcacgaggaca 7824800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 9778807 - 9778867
Alignment:
Q  119 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||| |||||||| ||||||||| |||||  | ||||||| ||||||||||||||    
T  9778807 tttaaactccggaccttgcgtatattatgcattgtcctaatcaactgagttaagctcacga 9778867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 1111841 - 1111896
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 171  Q
    |||||| ||| |||||||||||||||||||||||||||   |||||||| ||||||    
T  1111841 gggtttgaaccccagaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 2153500 - 2153538
Alignment:
Q  115 agggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  2153500 agggtttaaaccccagaccttgcatatattatgcattgt 2153538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 11574302 - 11574244
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 186  Q
    ||||||||| |||||||||| ||| |  ||||||||| |||||||||||||| ||||||    
T  11574302 cagaccttgtatatattatgcattatccttatcaactgagttaagctcacgatgacaga 11574244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 27185537 - 27185475
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||| |||||||||||||||||||||||||||   || ||||| || |||||||||||    
T  27185537 ggtttgaaccccagaccttgcatatattatgtattgtccctaccaactgagctaagctcacga 27185475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 35863814 - 35863876
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||| |||||||||||||||||||||||||||  ||| ||||| || |||||| ||||    
T  35863814 ggtttgaaccccagaccttgcatatattatgtattgtccttaccaactgagctaagcttacga 35863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 1149082 - 1149139
Alignment:
Q  129 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 186  Q
    ||||||||||||||||||| |||||  ||| ||||| || ||||||||||| ||||||    
T  1149082 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaga 1149139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 7827562 - 7827501
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||| ||||||||||| |||||   |||||||| |||||| ||||||| ||||    
T  7827562 aactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgaggaca 7827501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 21245853 - 21245792
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||| ||| ||||||||| ||||||||||| |||||  ||| |||||||| ||||||||||    
T  21245853 ggtttgaaccccagaccttacatatattatgcattgtccttaccaactaagctaagctcacg 21245792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 23629813 - 23629760
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||| ||||||   ||||||||||| ||||||||||| ||||    
T  23629813 accttgcatatattatatattgtccctatcaactaagataagctcacgatgaca 23629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 43011368 - 43011315
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||| ||||||||||||| | |||||||| ||||| |||||||| ||||    
T  43011368 accttgcatgtattatgtattgtctatatcaactgagttaggctcacgaggaca 43011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 44799073 - 44799118
Alignment:
Q  134 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||| |||||||||||  ||||||| ||||||||||||||||    
T  44799073 ttgcatattttatgtattgttcttatcaaataagttaagctcacga 44799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 5117254 - 5117206
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| |||||||||||||||||  ||||||||| || |||||||||||    
T  5117254 accttacatatattatgtattgtccttatcaactgagctaagctcacga 5117206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 8127532 - 8127456
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| | ||||| ||| ||| ||||||||||| ||||| |||||  ||| ||||| |||||||||||||| ||||    
T  8127532 ggtggtcatggtttgaaccccaaaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggaca 8127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 29791822 - 29791774
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||||||||||||||||| | |||||||| |||||| |||||||    
T  29791822 accttacatatattatgtattgtttctatcaactgagttaaactcacga 29791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 38573586 - 38573634
Alignment:
Q  129 agaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||| |||||||||| |||||  ||||||||| ||||||||||||    
T  38573586 agaccttgtatatattatgcattgttcttatcaactgagttaagctcac 38573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 49600267 - 49600327
Alignment:
Q  119 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||||||||||||||||| |||||| | ||  |||| || |||||||||||    
T  49600267 tttaaaccccagaccttgcatatattatttattgtctctactaactgagctaagctcacga 49600327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 51250233 - 51250301
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| |||| ||| |||||||||||||||  |||||  ||| ||||| |||||||||||||| ||||    
T  51250233 gggtttgaacttcaggccttgcatatattatacattgtccttaccaactgagttaagctcacgaggaca 51250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 3209 - 3139
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  3209 ggtggttcgggtttgaactc-agaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 48007547 - 48007614
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgac 183  Q
    ||||| |||||||||||||||||||||||||| |||||  ||| ||||| ||||||||||||| ||||    
T  48007547 gggttcaaactccagaccttgcatatattatgcattgtcattaccaactgagttaagctcacggcgac 48007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 45979163 - 45979111
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||| |||||    
T  45979163 ccagaccttgcatatattatgtattgtctttatcaaatgagttaagcccacga 45979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 7481275 - 7481226
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    |||||||||||||| |||||||||||| |||| ||||| |||||||||||    
T  7481275 ccagaccttgcatacattatgtattgtctttaccaactgagttaagctca 7481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 5458082 - 5458134
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||| |||||  ||||||||| || |||||||||||    
T  5458082 ccagaccttgcatatattatgcattgttcttatcaactgagctaagctcacga 5458134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 32862081 - 32862137
Alignment:
Q  115 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 171  Q
    ||||||| ||| ||||| ||||||||||||||||||||| | || ||||||||||||    
T  32862081 agggtttgaacgccagatcttgcatatattatgtattgtctataccaactaagttaa 32862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 429186 - 429241
Alignment:
Q  124 actccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| ||||||||||||||||||||| |   |||||||| ||||||||||||||    
T  429186 actccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacga 429241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 6384914 - 6384851
Alignment:
Q  114 tagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||  ||| ||||||||||||||||||||| |||||  |||| |||| ||||||||||||    
T  6384914 tagggttcgaaccccagaccttgcatatattatgcattgtccttattaactgagttaagctcac 6384851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 32315269 - 32315222
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  32315269 accttgcatatattatgtaatgtccttatcaactgagttaagctcacg 32315222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 38911345 - 38911298
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||  ||||| |||||||||| |||||||||||||    
T  38911345 accttgcatatattatacattgtctttatcaactgagttaagctcacg 38911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 48527244 - 48527189
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||| |||||||||||||||||| |||||  ||||||||| || ||||||||||    
T  48527244 aactccggaccttgcatatattatgcattgtccttatcaactgagataagctcacg 48527189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 1627942 - 1627996
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||||||| ||| ||||| |||  ||||| ||||||||||||    
T  1627942 aactccagaccttgcatatatcatgcattgtctttgccaactgagttaagctcac 1627996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 4044659 - 4044605
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagtta 170  Q
    ||||||||||| || | ||||||| ||||||||||||||| |||||||| |||||    
T  4044659 gggtttaaactgcatatcttgcatgtattatgtattgtatctatcaactgagtta 4044605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 5041398 - 5041332
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||| ||| ||||||||||||||||||||| |||||   || ||||| |||||||||||||| ||||    
T  5041398 gtttgaaccccagaccttgcatatattatgcattgtccataccaactcagttaagctcacgaggaca 5041332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 35165582 - 35165532
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||| |||||||||||||||||  ||||||||| |||||| ||||||    
T  35165582 cagaccttacatatattatgtattgtcgttatcaactgagttaaactcacg 35165532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 37864475 - 37864425
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||||||| |||||| ||| ||||| || |||||||||    
T  37864475 ccagaccttgcatatattatgcattgtacttaccaactgagctaagctcac 37864425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 3584250 - 3584197
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||| ||| ||||    
T  3584250 accttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggaca 3584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 3671885 - 3671848
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgt 153  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  3671885 gggtttgaactccagaccttgcatatattatgcattgt 3671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 41860259 - 41860320
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||| ||| | |||  |||||||||| ||||| |||||||| |||||||||||||||    
T  41860259 ggtttaaaccccaaatcttatatatattatgcattgtctttatcaattaagttaagctcacg 41860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 8879762 - 8879810
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  8879762 accttgcatatattatgcattgtctataccaactgagttaagctcacga 8879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 10029842 - 10029886
Alignment:
Q  133 cttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||    
T  10029842 cttgcatatattatgtattgtctttaccaattaagttaaactcac 10029886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 16577861 - 16577897
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  16577861 ggtttgaaccccagaccttgcatatattatgtattgt 16577897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 16587801 - 16587765
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  16587801 ggtttgaaccccagaccttgcatatattatgtattgt 16587765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 30857317 - 30857241
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||| |||||| ||||| | ||||||||||||||||| |||||   || |||||||| ||| ||||||| ||||    
T  30857317 ggtggttggggtttgaactcaaaaccttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 45425499 - 45425459
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaa 171  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  45425499 accttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 47195574 - 47195614
Alignment:
Q  138 atatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  47195574 atatattatgtattgtatttattaaccgagttaagctcacg 47195614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 7081646 - 7081717
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||| |||   ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  7081646 ggtggtttgggtttcaaccttagaccttgcatatattatgtattgtctttatcaactgagctaagctcacga 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 8810708 - 8810638
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  8810708 ggtggttcgggtttgaactc-agaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 8810638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 12412326 - 12412270
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||||||| ||||| | || |||||||||||||||||||| ||||    
T  12412326 cagaccttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 13496177 - 13496114
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||| |||||||||||||||||| |||||   |||||||| ||||||||||||||    
T  13496177 gggtttgaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacga 13496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 334190 - 334142
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 175  Q
    ||||||||||||||||||||| ||||| |||||||||| || |||||||    
T  334190 ccagaccttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 4450309 - 4450261
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||| ||||| |||||||||| || ||||||||||    
T  4450309 gaccttgcatatattatgcattgtctttatcaactgagctaagctcacg 4450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 21941459 - 21941519
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    |||||||||||||||||||| ||||||||| | |||||   |||||||| |||||||||||    
T  21941459 gggtttaaactccagaccttacatatattacgcattgtccctatcaactgagttaagctca 21941519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 28898917 - 28898849
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| |||||| |||||| ||||||||||| |||||  ||| ||||||||||||| |||||| ||||    
T  28898917 gggtttgaactccggacctttcatatattatgcattgtccttaccaactaagttaagatcacgaggaca 28898849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 29335575 - 29335643
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||  |||||||||||||||||||| ||||| | ||  |||| |||||||||||||| ||||    
T  29335575 gggtttaaacatcagaccttgcatatattatgcattgtttatactaactgagttaagctcacgaggaca 29335643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 5040847 - 5040901
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||||||| |||| |||| ||||| || ||||||||||| ||||    
T  5040847 gaccttgcatatattatgttttgtctttaccaactgagctaagctcacgatgaca 5040901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 17151296 - 17151234
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| ||| |||||||||||||||||||||||||||   || ||||| || |||||||||||    
T  17151296 ggtttgaaccccagaccttgcatatattatgtattgtcactaccaacttagctaagctcacga 17151234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 18256930 - 18256872
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagagc 188  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||| ||| ||||    
T  18256930 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggactgagc 18256872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 404206 - 404161
Alignment:
Q  134 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||||    
T  404206 ttgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 788927 - 788858
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 185  Q
    |||||| ||||||  ||||||||||||||||| |||||  ||| ||||| || ||||||||||| |||||    
T  788927 gggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgaggacag 788858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 2473664 - 2473627
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgt 153  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  2473664 gggtttaaaccccataccttgcatatattatgtattgt 2473627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 6470637 - 6470678
Alignment:
Q  137 catatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  6470637 catatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 8916481 - 8916542
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||||||||||||||||||||||||   || ||||| |||| ||||||||| ||||    
T  8916481 aactccggaccttgcatatattatgtattgtccctaccaactgagtttagctcacgaggaca 8916542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 15291705 - 15291758
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||||  |||||  ||| |||||||||||||||||||| ||||    
T  15291705 accttgcatatattattcattgtccttaccaactaagttaagctcacgaggaca 15291758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 331901 - 331949
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  331901 accttgcatatattatgcattgtctctaccaactgagttaagctcacga 331949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 1535371 - 1535327
Alignment:
Q  109 gtggttagggtttaaactccagaccttgcatatattatgtattgt 153  Q
    |||||||||||||||||| ||  |||||||||||||||| |||||    
T  1535371 gtggttagggtttaaacttcaatccttgcatatattatgcattgt 1535327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 2617206 - 2617266
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||  || ||||| ||||||||||| ||||| | || ||||||||||||||||||    
T  2617206 ggtttaaacctcaaaccttacatatattatgcattgtctctaccaactaagttaagctcac 2617266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 8381208 - 8381256
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||| ||||| ||||| |||| ||||| |||||||||||||    
T  8381208 gaccttgcatatgttatgcattgtctttaccaactgagttaagctcacg 8381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 12602075 - 12602023
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||||||||||||   || |||||||| ||| |||||||    
T  12602075 ccagaccttgcatatattatgtattgtccctaccaactaagctaaactcacga 12602023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 17329979 - 17330015
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgt 153  Q
    |||||||||  ||||||||||||||||||||||||||    
T  17329979 ggtttaaacctcagaccttgcatatattatgtattgt 17330015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 21599018 - 21598962
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaag 172  Q
    |||||||||| ||  |||||||||||||||||||||||   || |||||||||||||    
T  21599018 gggtttaaaccccgtaccttgcatatattatgtattgttcataccaactaagttaag 21598962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 29506874 - 29506825
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||    
T  29506874 gaccttgcatatattatgtattgtctataccaactaagttaagctcacga 29506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 31979427 - 31979498
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||| ||||||| |||||||||||| ||| |||||| | || ||||||||||||| ||||||    
T  31979427 ggtggttggggtttgaactccaaaccttgcatataatatatattgtctctaccaactaagttaagttcacga 31979498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 563260 - 563199
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||| |||||| ||||||||||||||||||| ||||  ||||||||| || |||||||||||    
T  563260 gtttgaactccggaccttgcatatattatgttttgtccttatcaactgagctaagctcacga 563199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 32950762 - 32950823
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||| |||||| |||||||||||||||||| ||||| | || ||||| |||||||||||||    
T  32950762 ggtttgaactccggaccttgcatatattatgcattgtttataccaactgagttaagctcacg 32950823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 34848525 - 34848476
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||| |||||    
T  34848525 cagaccttgcatatattatgaattgtctttgtcaactaagttaaactcac 34848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 42045372 - 42045440
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||||||||||||||||||||||||| |||||   || ||||| || ||||||||||| ||||    
T  42045372 gggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 42440140 - 42440184
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattg 152  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||||    
T  42440140 ggtggttagggtttgaactccagaccttacatatattatgcattg 42440184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 44221037 - 44220985
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||| ||||||| || ||||| | |||||||||||||||||||||||    
T  44221037 ccagaccttgtatatattgtgcattgtctctatcaactaagttaagctcacga 44220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 17651379 - 17651442
Alignment:
Q  115 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||| |||  |||||||||||||| |||||||||||   |||||||| |||||||||||||    
T  17651379 agggtttgaacctcagaccttgcatattttatgtattgtccatatcaacttagttaagctcacg 17651442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 26705649 - 26705598
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  26705649 cagaccttgcatatattatgtattgttcttaccaactaagctaagttcacga 26705598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 12214043 - 12213993
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||||||||||||||||||   |||||||| || |||||||||    
T  12214043 ccagaccttgcatatattatgtattgttcctatcaactgagctaagctcac 12213993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 16033452 - 16033518
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||| ||| ||||||||||||||||||||| |||||   |||||||| ||| |||||||||| ||||    
T  16033452 gtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 23405372 - 23405418
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||||    
T  23405372 gaccttgcatatattatgcattgtccttaacaactaagttaagctca 23405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 30279638 - 30279688
Alignment:
Q  134 ttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||||||||  |||||||| || ||||||||||| ||||    
T  30279638 ttgcatatattatgtattgtacctatcaactgagctaagctcacgaggaca 30279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 43843937 - 43843891
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  43843937 accttgcatatattatgcattgtccttaccaactaagttaagctcac 43843891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 28039872 - 28039921
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  28039872 cagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 29987104 - 29987149
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||||| |||||  ||||||||||||||||||||||||| |||||    
T  29987104 ggtggttggggttcgaactccagaccttgcatatattatgcattgt 29987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 30548106 - 30548151
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||||    
T  30548106 accttgcatatattatgcattgtccttaccaactaagttaagctca 30548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 47835732 - 47835777
Alignment:
Q  133 cttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||| |||||||||||||||| |||||||||| |||||| ||||||    
T  47835732 cttgtatatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 49875613 - 49875662
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||| |||||  ||| ||||| ||||||||||||||    
T  49875613 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 49875662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 52267814 - 52267757
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||| ||||| |||||  ||| ||||| |||||||||||||| ||||    
T  52267814 ccagaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggaca 52267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 1761506 - 1761454
Alignment:
Q  133 cttgcatatattatgtatt-gtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||| ||| || |||||||||||||||||||| |||| ||||    
T  1761506 cttgcatatattatgaatttgtctttatcaactaagttaagcttacgaggaca 1761454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 4859133 - 4859085
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 175  Q
    ||||||||| ||||||||||||||| |  ||||||||| ||||||||||    
T  4859133 ccagaccttacatatattatgtattattcttatcaactgagttaagctc 4859085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 10654461 - 10654509
Alignment:
Q  130 gaccttgcatatattatgtattgt-atttatcaactaagttaagctcac 177  Q
    |||||||||||||||||| |||||  |||||||||| ||||||||||||    
T  10654461 gaccttgcatatattatgcattgtcttttatcaactgagttaagctcac 10654509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 11681284 - 11681244
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatt 156  Q
    |||||| ||| ||||||||||||||||||||| ||||||||    
T  11681284 gggtttgaaccccagaccttgcatatattatgcattgtatt 11681244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 16967209 - 16967257
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||| |||||   ||||||||||| |||||||||||    
T  16967209 accttgcatatattatgcattgtccatatcaactaagctaagctcacga 16967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 19620623 - 19620575
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||||||||  ||| ||||| || ||||||||||    
T  19620623 gaccttgcatatattatgtattgtccttaccaactgagctaagctcacg 19620575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 24978290 - 24978242
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  24978290 accttgcatatattatgtattatctataccaactgagttaagctcacga 24978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 31401667 - 31401715
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||| ||||| ||| |||||| |||||| ||||||    
T  31401667 gaccttgcatatattatgcattgtttttgtcaactgagttaaactcacg 31401715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 47070908 - 47070872
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgt 153  Q
    ||||||||||||  |||||||||||||||||||||||    
T  47070908 ggtttaaactccgaaccttgcatatattatgtattgt 47070872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 47071972 - 47072020
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||||||||  ||| ||| | |||||||||||||    
T  47071972 gaccttgcatatattatgtattgttcttaccaattgagttaagctcacg 47072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 49183220 - 49183164
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 186  Q
    ||||||||||||||||||||||||  ||| ||||| || ||| ||||||| ||||||    
T  49183220 gaccttgcatatattatgtattgtccttaccaactgagctaaactcacgaggacaga 49183164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 52441511 - 52441579
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||| |||| || |||||||||||||||||| ||||| | || ||||| || ||||||||||| ||||    
T  52441511 gggttcaaacgccggaccttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 52441579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 17062354 - 17062402
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 17586004 - 17585956
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17585956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 29546962 - 29546895
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 175  Q
    |||||| ||||||| ||| |||||||||||||||||||| ||||||   |||||||| ||||||||||    
T  29546962 ggtggtcagggtttgaaccccagaccttgcatatattatctattgtccctatcaactgagttaagctc 29546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 6248355 - 6248301
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||| ||||||||||||||||||||| |||| |||||||| |||||| |||||    
T  6248355 aactccggaccttgcatatattatgtatcgtatatatcaactgagttaaactcac 6248301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 1877676 - 1877725
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||| ||||| | |||||||| ||||||||||||||    
T  1877676 gaccttgcatatattatgcattgtctatatcaactgagttaagctcacga 1877725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 29376962 - 29376894
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||||||||||||||||||||||| | |||||   || ||||| |||||||||||||| ||||    
T  29376962 gggtttgaactccagaccttgcatatattacgcattgtccataccaactgagttaagctcacgaggaca 29376894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 29924917 - 29924985
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||| ||  ||||||||||||||||| |||||  ||| ||||||||||||| |||||| ||||    
T  29924917 gggtttaaaccccgaaccttgcatatattatgcattgttcttaacaactaagttaagttcacgaggaca 29924985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 2181188 - 2181126
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||| ||||||||| ||||||||||| |||||   || ||| ||||||||||||||||    
T  2181188 ggtttaaaccccagaccttacatatattatgcattgttcctaccaattaagttaagctcacga 2181126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 9014684 - 9014714
Alignment:
Q  123 aactccagaccttgcatatattatgtattgt 153  Q
    |||||||||||||||||||||||||||||||    
T  9014684 aactccagaccttgcatatattatgtattgt 9014714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 27191817 - 27191751
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||| |||| |||||||||||||||||||| |||||  ||| ||||| || ||||||||||| ||||    
T  27191817 gtttgaacttcagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 29293236 - 29293170
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||| |||||| |||||| |||||||||| |||||| | ||| |||| |||||||||||||| ||||    
T  29293236 gtttgaactccggaccttacatatattatatattgtctatattaactgagttaagctcacgaggaca 29293170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 32223880 - 32223942
Alignment:
Q  117 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||| |||||||||| |||||||||||||| ||||| | |||||||| |  |||||||||||    
T  32223880 ggtttgaactccagactttgcatatattatgcattgtctctatcaactgaactaagctcacga 32223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 36392837 - 36392883
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||||||||||| ||| |||||| |||||||||| ||||||||||||    
T  36392837 accttgcatatactatctattgtctttatcaactgagttaagctcac 36392883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 36781469 - 36781399
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 186  Q
    |||||||||| || ||| ||||||||||||||||||||  ||| ||||| || || |||||||| ||||||    
T  36781469 gggtttaaaccccggactttgcatatattatgtattgtccttaccaactgagctaggctcacgatgacaga 36781399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 10656474 - 10656441
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtatt 151  Q
    |||| |||||||||||||||||||||||||||||    
T  10656474 gtttgaactccagaccttgcatatattatgtatt 10656441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 11771754 - 11771705
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||||||||||||||||||||| | |||||||| || |||||| ||||    
T  11771754 gaccttgcatatattatgtattgtctctatcaactgagctaagcttacga 11771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 27718896 - 27718957
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||| |||||| |||||||||||||||||| |||||   |||||||| || |||||||||||    
T  27718896 gtttgaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacga 27718957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 30071531 - 30071580
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacgac 180  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |||||||    
T  30071531 accttgtatatattatgcattgttcttatcaactaagttaagttcacgac 30071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 39433460 - 39433403
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||||| |||||||||||   |||||||| || ||||||||||| ||||    
T  39433460 ccagaccttgcatattttatgtattgttcatatcaactgagctaagctcacgaggaca 39433403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 39821945 - 39821876
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 185  Q
    |||||| ||| ||||||||||||||||||||| |||||   || ||||| || ||||||||||| |||||    
T  39821945 gggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacag 39821876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 6394757 - 6394825
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||||| ||| ||||||||||||||| ||||   |||||||| || |||| |||||| ||||    
T  6394757 gggtttaaactccggacattgcatatattatgttttgtccctatcaactgaggtaagttcacgaggaca 6394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 9019564 - 9019624
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 176  Q
    ||||| |||| | ||||||||||||||||||| ||||| |||| |||||  ||||||||||    
T  9019564 gggttcaaacccaagaccttgcatatattatgcattgtctttaccaactgcgttaagctca 9019624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 28084328 - 28084280
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||  ||||| | |||||||| ||||||||||||||    
T  28084328 accttgcatatattattcattgtctctatcaactgagttaagctcacga 28084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 16204823 - 16204878
Alignment:
Q  122 aaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    |||| ||||||||||||||||||||| |||||  ||||||||| ||||||||||||    
T  16204823 aaaccccagaccttgcatatattatgcattgtccttatcaactgagttaagctcac 16204878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 34977265 - 34977202
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||| |||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  34977265 gggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctcacga 34977202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 40967386 - 40967434
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  40967386 accttgcatatattatgcattgtccttatcaactgagttaagctcacga 40967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 10076916 - 10076873
Alignment:
Q  135 tgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||    
T  10076916 tgcatatattatgtattgtctttatcagctaagttaagttcacg 10076873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 37320532 - 37320579
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    ||||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  37320532 accttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 42200736 - 42200693
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaa 171  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||    
T  42200736 cagaccttgcatatattatgtattgtctttaccaactgagttaa 42200693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 24520650 - 24520700
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 177  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| |||||||||    
T  24520650 ccagaccatgcatatattatgcattgtctttaccaactaagctaagctcac 24520700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 3904277 - 3904208
Alignment:
Q  102 tttttgggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 171  Q
    ||||| |||| | ||||||| ||| ||||||||| ||||||||||| |||||   |||||||||||||||    
T  3904277 tttttaggtgatcagggtttgaaccccagaccttacatatattatgcattgtccctatcaactaagttaa 3904208  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 23407010 - 23407055
Alignment:
Q  108 ggtggttagggtttaaactccagaccttgcatatattatgtattgt 153  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  23407010 ggtggtcagggtttgaaccccagaccttgcatatattatgcattgt 23407055  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 33064040 - 33063979
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| |||||||||||||||||| |||||   |||||||| || ||||||||||| ||||    
T  33064040 aactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaca 33063979  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 2257021 - 2256969
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  2257021 ccagaccttgcatatattatgcattgtccataccaactgagttaagctcacga 2256969  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 5676784 - 5676732
Alignment:
Q  132 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  5676784 ccttgcatatattatgcattgtcattaccaactgagttaagctcacgaggaca 5676732  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 7206186 - 7206118
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    ||||||||||  | |||||||||||||||||| ||||| | || ||||| || ||||||||||| ||||    
T  7206186 gggtttaaacctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgaggaca 7206118  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 7537164 - 7537108
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||||| |||||||||||||||||| |||||   |||||||| |||||| |||||||    
T  7537164 aactccggaccttgcatatattatgcattgttcctatcaactgagttaatctcacga 7537108  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10195661 - 10195725
Alignment:
Q  115 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| ||||||||| ||||||||||||||| ||| |   |||||||| || |||||||||||    
T  10195661 agggtttgaactccagatcttgcatatattatgcattatccatatcaactgagctaagctcacga 10195725  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 20990919 - 20990967
Alignment:
Q  131 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||| ||||| ||||| | || ||||||||||||||||||||    
T  20990919 accttgcatattttatgcattgtctataacaactaagttaagctcacga 20990967  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 27934868 - 27934928
Alignment:
Q  127 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagag 187  Q
    ||||| |||| ||||||||||||||||  ||| ||||| || ||||||||||| |||||||    
T  27934868 ccagatcttgtatatattatgtattgtccttaccaactgagctaagctcacgaggacagag 27934928  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 29896294 - 29896362
Alignment:
Q  116 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||| ||| ||| ||||||||||||||||| ||||| | |||||||| | |||| ||||||| ||||    
T  29896294 gggtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 35372942 - 35373002
Alignment:
Q  119 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||| |||||||||||||||||||| ||||||  ||| ||||| || || ||||||||    
T  35372942 tttaaaccccagaccttgcatatattatatattgtccttaccaactgagctatgctcacga 35373002  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 40895922 - 40895858
Alignment:
Q  110 tggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagct 174  Q
    |||| ||||||||||| ||  ||||| ||||||||||| ||||| | || |||||||||||||||    
T  40895922 tggtcagggtttaaaccccgaaccttccatatattatgcattgtttctaccaactaagttaagct 40895858  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 42475122 - 42475178
Alignment:
Q  128 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||| ||||| ||||| | || ||||| |||||||||||||| ||||    
T  42475122 cagaccttgcatattttatgcattgtttataccaactgagttaagctcacgaggaca 42475178  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 44694733 - 44694681
Alignment:
Q  132 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 184  Q
    |||||||||||||||| ||||| | |||||||| ||||||| |||||| ||||    
T  44694733 ccttgcatatattatgcattgtctatatcaactgagttaagttcacgaggaca 44694681  T

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Target: scaffold0088 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 48075 - 48019
Alignment:
Q  123 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    ||||||||||||||||||||||||| ||| |  ||||||||| |||||| |||||||    
T  48075 aactccagaccttgcatatattatgcattatgcttatcaactgagttaaactcacga 48019  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 99096 - 99035
Alignment:
Q  118 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 179  Q
    |||| ||| ||||||||||||||||||||| |||||   |||||||| ||| ||||||||||    
T  99096 gtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacga 99035  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 25436 - 25388
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  25436 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 34902 - 34950
Alignment:
Q  130 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 178  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  34902 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 34950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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