View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320_high_57 (Length: 262)

Name: NF1320_high_57
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320_high_57
NF1320_high_57
[»] chr4 (6 HSPs)
chr4 (55-230)||(2541333-2541508)
chr4 (121-201)||(7395279-7395359)
chr4 (124-199)||(22093481-22093556)
chr4 (55-127)||(26063316-26063387)
chr4 (55-102)||(647826-647873)
chr4 (60-130)||(26060135-26060205)
[»] chr2 (5 HSPs)
chr2 (120-229)||(13517878-13517987)
chr2 (120-217)||(11059382-11059479)
chr2 (55-114)||(32576308-32576367)
chr2 (55-102)||(40017553-40017600)
chr2 (55-102)||(31527965-31528012)
[»] chr3 (7 HSPs)
chr3 (120-229)||(2783696-2783804)
chr3 (116-199)||(18645107-18645187)
chr3 (120-199)||(35412227-35412303)
chr3 (55-114)||(13979054-13979113)
chr3 (55-102)||(11139191-11139238)
chr3 (55-102)||(22626935-22626982)
chr3 (74-114)||(31878312-31878352)
[»] chr7 (11 HSPs)
chr7 (120-201)||(26809172-26809253)
chr7 (60-135)||(36843565-36843641)
chr7 (63-114)||(23313832-23313883)
chr7 (60-114)||(9765361-9765415)
chr7 (55-112)||(3862518-3862575)
chr7 (55-102)||(6966723-6966770)
chr7 (55-102)||(17863717-17863764)
chr7 (55-102)||(17866976-17867023)
chr7 (55-102)||(23760231-23760278)
chr7 (80-114)||(23107554-23107588)
chr7 (60-114)||(35773159-35773213)
[»] chr5 (4 HSPs)
chr5 (120-229)||(28562795-28562903)
chr5 (120-229)||(28566363-28566471)
chr5 (116-199)||(42062548-42062628)
chr5 (55-102)||(34405424-34405471)
[»] chr6 (13 HSPs)
chr6 (120-192)||(20189867-20189939)
chr6 (120-192)||(22146052-22146124)
chr6 (120-201)||(16730976-16731057)
chr6 (55-114)||(15537847-15537906)
chr6 (60-114)||(19665292-19665346)
chr6 (55-114)||(1838037-1838096)
chr6 (55-114)||(15534652-15534711)
chr6 (55-122)||(20527785-20527852)
chr6 (55-102)||(13017812-13017859)
chr6 (55-102)||(14790194-14790241)
chr6 (55-102)||(14795222-14795269)
chr6 (55-102)||(32704876-32704923)
chr6 (55-113)||(16883241-16883299)
[»] scaffold0567 (1 HSPs)
scaffold0567 (55-114)||(6432-6491)
[»] chr8 (2 HSPs)
chr8 (55-114)||(12575922-12575981)
chr8 (55-114)||(13096594-13096653)
[»] chr1 (5 HSPs)
chr1 (55-114)||(1936191-1936250)
chr1 (55-114)||(16190799-16190858)
chr1 (55-102)||(10759697-10759744)
chr1 (60-114)||(34065908-34065962)
chr1 (55-99)||(23990710-23990754)
[»] scaffold0665 (1 HSPs)
scaffold0665 (55-102)||(267-314)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 2541508 - 2541333
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagctagacatagaaatataaataaatagc 154  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  2541508 aggaattcaacaaattagagttcccataagattacattagattcatctaagtctcaaccaatagagaaattagctaaacatagaaatacaaataaatagc 2541409  T
Q  155 atggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttctgttgccttca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2541408 atggaaaataaaattaaccatgaaaccatgttgttcctcatttctccactgcttcgtgagttttctgttgccttca 2541333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 7395279 - 7395359
Alignment:
Q  121 aaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 201  Q
    |||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||  ||| |||||||||||||| ||||||    
T  7395279 aaattaactagacatagagatacaaataaatagcatgaaaaataaaattaaccacaaaaacatgttgttcctcaattctct 7395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 22093481 - 22093556
Alignment:
Q  124 ttagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 199  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||  | ||| |||||||||| ||||    
T  22093481 ttagctacacatagagatacaaataaatatcttggaaaataaaattaaccatgtcatcatcttgttcctcaattct 22093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 26063316 - 26063387
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattag 127  Q
    |||| |||||||||| || ||||||||| |||||||| | |||||||| ||||||||||| || |||||||||    
T  26063316 aggagttcaacaaatcagggttcccatatgattacattagattcatctcagtctcaaccacaa-agaaattag 26063387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 647826 - 647873
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  647826 aggagttcaacaaattagggttcccataggattacatcagattcatct 647873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 26060205 - 26060135
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagcta 130  Q
    ||||||||| |||  ||| ||||  |||| ||||||||||||||||||||||||||  || ||||||||||    
T  26060205 ttcaacaaactaggattctcatacaattatatcatattcatctaagtctcaaccaattgaaaaattagcta 26060135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 13517987 - 13517878
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 219  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||  |||  |||||| ||||||||||||||| |    
T  13517987 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcggttctctactgcttcgtgagtttcc 13517888  T
Q  220 tgttgccttc 229  Q
    ||||||||||    
T  13517887 tgttgccttc 13517878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 11059479 - 11059382
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttt 217  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||    
T  11059479 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgttgctcggttctctactgcttcgtgagttt 11059382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 32576308 - 32576367
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  32576308 aggagttcaacaaattagggttcctataggattacatcatattcatctaagtctcaacca 32576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 40017600 - 40017553
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  40017600 aggagttcaacaaattagggttcccataggattacatcatattcatct 40017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 31528012 - 31527965
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  31528012 aggagttcaacaaattagggttcccataggattacatcagattcatct 31527965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 2783804 - 2783696
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 219  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||  |||||| |||||||||||| ||||    
T  2783804 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcggttctctactgcttcgtgag-tttc 2783706  T
Q  220 tgttgccttc 229  Q
    ||||||||||    
T  2783705 tgttgccttc 2783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 18645107 - 18645187
Alignment:
Q  116 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 199  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||| |||||||||||| ||||    
T  18645107 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accgtgttgttcctcaattct 18645187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 35412303 - 35412227
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 199  Q
    ||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  35412303 gaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 35412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 13979113 - 13979054
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| |||||||||||||||| ||| |||| ||||||||| |||||    
T  13979113 aggagttcaacaaattagggttcccataagattacctcagattcgtctaagtcttaacca 13979054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 11139191 - 11139238
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  11139191 aggagttcaacaaattagggttcccataggattacatcagattcatct 11139238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 22626935 - 22626982
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  22626935 aggagttcaacaaattagggttcccataggattacatcagattcatct 22626982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 31878312 - 31878352
Alignment:
Q  74 gttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| |||||||||| |||| ||||||||||||||||||||    
T  31878312 gttctcataagattatatcagattcatctaagtctcaacca 31878352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 26809172 - 26809253
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 201  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  26809172 gaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacaggttgttcctcaattctct 26809253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 36843565 - 36843641
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca-aaagagaaattagctagacat 135  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||| || |||| |||||||    
T  36843565 ttcaacaaattagagttcccacaagattacatcaaattcatctaagtctcagccacaaagaaaatttaggtagacat 36843641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 23313832 - 23313883
Alignment:
Q  63 aacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  23313832 aacaaattagagttcccataagattacatcggattcatctaagtctcaacca 23313883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 9765415 - 9765361
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  9765415 ttcaacaaattagggttctcataggattacatcatattcatctaagtctcaacca 9765361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 3862518 - 3862575
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaac 112  Q
    |||| ||||||||||||| |||| ||||||||||||| | ||||| ||||||||||||    
T  3862518 aggagttcaacaaattagggttctcataagattacattagattcaactaagtctcaac 3862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 6966770 - 6966723
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  6966770 aggagttcaacaaattagggttcccataggattacatcagattcatct 6966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 17863717 - 17863764
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17863717 aggagttcaacaaattagggttcccataggattacatcagattcatct 17863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 17866976 - 17867023
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17866976 aggagttcaacaaattagggttcccataggattacatcagattcatct 17867023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 23760231 - 23760278
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  23760231 aggagttcaacaaattagggttcccataggattacatcagattcatct 23760278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 23107588 - 23107554
Alignment:
Q  80 ataagattacatcatattcatctaagtctcaacca 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  23107588 ataagattacatcaaattcatctaagtctcaacca 23107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 35773159 - 35773213
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    ||||||||||||||||||  ||| |||||||| | |||||||| |||||||||||    
T  35773159 ttcaacaaattagagttcttataggattacataagattcatctcagtctcaacca 35773213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 28562795 - 28562903
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 219  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||   ||||| |||||||||||| ||||    
T  28562795 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcgggtctctactgcttcgtgag-tttc 28562893  T
Q  220 tgttgccttc 229  Q
    ||||||||||    
T  28562894 tgttgccttc 28562903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 28566363 - 28566471
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 219  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||   ||||| |||||||||||| ||||    
T  28566363 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcgggtctctactgcttcgtgag-tttc 28566461  T
Q  220 tgttgccttc 229  Q
    ||||||||||    
T  28566462 tgttgccttc 28566471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 42062628 - 42062548
Alignment:
Q  116 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 199  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  42062628 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 42062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 34405471 - 34405424
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  34405471 aggagttcaacaaattagggttcccataggattacatcagattcatct 34405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 20189867 - 20189939
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 192  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  20189867 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 20189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 22146124 - 22146052
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 192  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22146124 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 22146052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 16731057 - 16730976
Alignment:
Q  120 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 201  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||    
T  16731057 gaaattagctagacatagagatacaaataaatagcatgaaaactaaaattaaccatgaaaacatgttgttcctcaattctct 16730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 15537906 - 15537847
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  15537906 aggagttcaacaaattagggttcccatatgattacatcaaattcatctcagtctcaacca 15537847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 19665292 - 19665346
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  19665292 ttcaacaaattagggttcccataggattacatcagattcatctcagtctcaacca 19665346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 1838096 - 1838037
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||| ||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  1838096 aggagttcaataaattagggttcccataggattacatcagattcatctcagtctcaacca 1838037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 15534711 - 15534652
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||    
T  15534711 aggagttcaacaaattagggttcccataggattacatcagattcatctcaatctcaacca 15534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 20527785 - 20527852
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaa 122  Q
    |||| ||||||| ||||  |||||||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  20527785 aggagttcaacacattaaggttcccataaaattacatcagattcatctaggtctcaaccaaaaaagaa 20527852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 13017812 - 13017859
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  13017812 aggagttcaacaaattagggttcccataggattacatcagattcatct 13017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 14790241 - 14790194
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14790241 aggagttcaacaaattagggttcccataggattacatcagattcatct 14790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 14795269 - 14795222
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14795269 aggagttcaacaaattagggttcccataggattacatcagattcatct 14795222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 32704876 - 32704923
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  32704876 aggagttcaacaaattagggttcccataggattacatcagattcatct 32704923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 16883299 - 16883241
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacc 113  Q
    |||| ||||||||||||| |||| ||||| ||||||||| |||||| ||||||| ||||    
T  16883299 aggagttcaacaaattagggttctcataaaattacatcagattcatttaagtcttaacc 16883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 6432 - 6491
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||||| |||||||||    
T  6432 aggagttcaacaaattaaggttcccataagattacatcagattcatctaaatctcaacca 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 12575922 - 12575981
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  12575922 aggagttcaacaaattagggttcctataggattacatcagattcatctaagtctcaacca 12575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 13096653 - 13096594
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||| |||| || ||||||||| ||||||||||  |||||||||||||||||||    
T  13096653 aggagttcaataaatcagggttcccataggattacatcaggttcatctaagtctcaacca 13096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 1936250 - 1936191
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||  |||||||||||||||||| | ||||||||||||||||||||    
T  1936250 aggagttcaacaaattatggttcccataagattacatgagattcatctaagtctcaacca 1936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 16190799 - 16190858
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  16190799 aggagttcaacaaattagggttcctataagattacatcagattcatctaagactcaacca 16190858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 10759744 - 10759697
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  10759744 aggagttcaacaaattagggttcccataggattacatcagattcatct 10759697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 34065962 - 34065908
Alignment:
Q  60 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 114  Q
    |||||||||||||  |||||||||||||||||||  |||||| |||||| |||||    
T  34065962 ttcaacaaattaggattcccataagattacatcaagttcatcaaagtcttaacca 34065908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 23990710 - 23990754
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattca 99  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||    
T  23990710 aggagttcaacaaattagtgttcccataagattaaatcagattca 23990754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 267 - 314
Alignment:
Q  55 aggaattcaacaaattagagttcccataagattacatcatattcatct 102  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  267 aggagttcaacaaattagggttcccataggattacatcagattcatct 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University