View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_59 (Length: 261)
Name: NF1320_high_59
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 5159853 - 5159623
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcataattaa----ctatgtcctgtcatctttacaaaaattgaca |
124 |
Q |
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| T |
5159853 |
aacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctttacaaaaattgaca |
5159754 |
T |
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| Q |
125 |
ttatcataaaaatcttaaagtttttccaatggcgtcaatatatac----atcaacttatttcattgtttttgttaattatttaaaatgtaaaatcaataa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5159753 |
ttatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatttcattgtttttgttaattatttaaaatttaaaatcaataa |
5159654 |
T |
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| Q |
221 |
aaaagttatcttcattgtaacaatccatccc |
251 |
Q |
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| T |
5159653 |
aaaagttatcttcattgtaacaatccatccc |
5159623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 5195495 - 5195258
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattat |
128 |
Q |
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| T |
5195495 |
aacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcataattaactatgtcctgtcatctttacaaaaattgacattat |
5195396 |
T |
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| Q |
129 |
cataaaaatctt-aaagtttttccaatggcgtcaatatatac----atcaacttatttcattgtttttgttaattatttaaaatgtaaaatcaataaaaa |
223 |
Q |
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| T |
5195395 |
cataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcgttgtttttgttaattatttaaaatttaaaataaaaaaaaa |
5195296 |
T |
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| Q |
224 |
agttatcttcattgtaacaatccatccccaaaaccatc |
261 |
Q |
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| T |
5195295 |
agttatcttcattgtaacaatcgatccccaaaaccatc |
5195258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 5182101 - 5181860
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcataattaa----ctatgtcctgtcatctttacaaaaattgaca |
124 |
Q |
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|||||||||||| ||||||| | |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
5182101 |
aacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctatacaaaaattgaca |
5182002 |
T |
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| Q |
125 |
ttatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatcaata |
219 |
Q |
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| T |
5182001 |
ttatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcattctttttgttaattatttaaaatttaaaatcaata |
5181902 |
T |
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| Q |
220 |
aaaaagttatcttcattgtaacaatccatccccaaaaccatc |
261 |
Q |
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| T |
5181901 |
taaaagttatcttcattgtaacaatccatccccaaaaccatc |
5181860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 4842756 - 4842927
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattat |
128 |
Q |
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| T |
4842756 |
aacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtccggtcatctttcaaaaaattaacattat |
4842855 |
T |
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| Q |
129 |
cataaaaatcttaaagtttttccaatggcgtcaatatatacatca----acttatttcattgtttttgttaa |
196 |
Q |
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|||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||| |
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| T |
4842856 |
cataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcattgtttttgttaa |
4842927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 5172769 - 5172630
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattat |
128 |
Q |
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|||||||| | | ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
5172769 |
aacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtccagttatctttacaaaaattgacattat |
5172670 |
T |
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| Q |
129 |
cataaaaatcttaaagtttttccaatggcgtcaatatata |
168 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
5172669 |
cataaaaatcttaaagtttttccaatggactcaatatata |
5172630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 5213661 - 5213602
Alignment:
| Q |
29 |
aacatgttatagttgatatctagttcttccaaatccttcaaattgcataatcctgtcata |
88 |
Q |
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|||||||||||| |||||||||| ||| ||||||||||||| ||||||| |||||||||| |
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| T |
5213661 |
aacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgtcata |
5213602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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