View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_high_63 (Length: 258)
Name: NF1320_high_63
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 40866546 - 40866751
Alignment:
| Q |
18 |
caaaggtggttcatcaacaaatacattaaacatcaccttattattctaaattatacaatctagcaaaaactcctacaagtgcagcagtattgtaggtaca |
117 |
Q |
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| T |
40866546 |
caaaggtggttcatcaacaaatacattaaacatcaccttattattctaaattatacaatctagcaaaaactcctacaagtgcagcagtattgtaggtaca |
40866645 |
T |
|
| Q |
118 |
agcctccaactgttcaaaatttcttctttcatctctaaattggtccttattatcaggtccaccaacaagggcaccgatgagaatattagggttaggctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40866646 |
agcctccaactgttcaaaatttcttctttcatctctaaattggtccttattatcaggtccaccaacaagggcaccgatgagaatattagggttaggctta |
40866745 |
T |
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| Q |
218 |
ggactt |
223 |
Q |
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|||||| |
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| T |
40866746 |
ggactt |
40866751 |
T |
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