View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_12 (Length: 519)
Name: NF1320_low_12
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 160 - 515
Target Start/End: Original strand, 1452280 - 1452635
Alignment:
| Q |
160 |
taaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctccgttcggtt |
259 |
Q |
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| T |
1452280 |
taaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctccgttcggtt |
1452379 |
T |
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| Q |
260 |
aggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaattgatcgatgt |
359 |
Q |
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| T |
1452380 |
aggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaattgatcgatgt |
1452479 |
T |
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| Q |
360 |
attttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatatggttcgagagtaaattgatgaaagaatgata |
459 |
Q |
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| T |
1452480 |
attttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatatggttcgagagtaaattaatttaagaacgata |
1452579 |
T |
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| Q |
460 |
atttaagaactaaatttaagaatggttccatttgctttgatacctctgtggtgctg |
515 |
Q |
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| T |
1452580 |
atttaagaactaaatttaagaatggttccatttgctttgatacctcggtgctgctg |
1452635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 1452079 - 1452182
Alignment:
| Q |
29 |
agtcttccactatagtaacaaagttgttagctgcttgctctatggagtttaagaaactcatctctctaactacaaataaaaaatcaacaagggttgtatc |
128 |
Q |
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| T |
1452079 |
agtcttccactttagtaacaaggttgttagctgcttgctttatggagtttaagaaactcatctctctaactacaaataaaaaatcaacaagggttgtatc |
1452178 |
T |
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| Q |
129 |
atat |
132 |
Q |
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|||| |
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| T |
1452179 |
atat |
1452182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 500
Target Start/End: Original strand, 1453751 - 1453943
Alignment:
| Q |
309 |
taagaggggaaccattgttattaatatattatggactaaattgatcgatgtattttctaatactttatggactaaattgatgaatttc-tgtactttaag |
407 |
Q |
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| T |
1453751 |
taagagggggatcattgttattaagatattatggaccaaattgat-aatcgattttctaatactttatggactaaattgacaaatatcacctactttagg |
1453849 |
T |
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| Q |
408 |
tattagttattatatttatatggttcgagagtaaattgatgaaagaatgataa-tttaagaactaaatttaagaatggttccatttgctttgat |
500 |
Q |
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| T |
1453850 |
tatcggttattttatttatatggttagagactaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttgat |
1453943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 1455828 - 1455909
Alignment:
| Q |
43 |
gtaacaaagttgttagctgcttgctctatggagtttaagaaactcatctctctaactacaaat-aaaaaatcaacaagggtt |
123 |
Q |
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| T |
1455828 |
gtaacatatttgtttgctgcttgctttatggatcttaggaacctcatctctccaaccacaaataaaaaaatcaacaacggtt |
1455909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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