View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_14 (Length: 519)
Name: NF1320_low_14
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 293 - 507
Target Start/End: Original strand, 9641933 - 9642132
Alignment:
| Q |
293 |
tttcattagcatatcgttcaaaaatttggtcttctttcgaactaacttccaccatacaaatatcagcctctatgtagttagacaacacttgaaaaggatc |
392 |
Q |
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| T |
9641933 |
tttcattagcatattgttcaaaaatttggtcttctttcggagtaacttccaccatacaaatatcagtatctatgtagttagacaacacttgaaaaggatc |
9642032 |
T |
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| Q |
393 |
ttcatcgactttcataggtggtattactttattttccaaaagtattatgaaatttacaccttcattcgtcataaaagaactattataaatgtgttccaac |
492 |
Q |
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| T |
9642033 |
ttcatcgactttcataggtgattttac---------------tattatgaaatttacaccttcattcgtcataaaagaactgttataaatgtgttccaac |
9642117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 377 - 507
Target Start/End: Original strand, 9627349 - 9627479
Alignment:
| Q |
377 |
acacttgaaaaggatcttcatcgactttcataggtggtattactttattttccaaaagtattatgaaatttacaccttcattcgtcataaaagaactatt |
476 |
Q |
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| T |
9627349 |
acacttgaaaaggatcttcatcgactttcataggtggttttactttattttccaaaagtattatgaaatttacaccttcattcgtcataaaagaactgtt |
9627448 |
T |
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| Q |
477 |
ataaatgtgttccaactcgacttttgatatt |
507 |
Q |
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| T |
9627449 |
ataaatgtgtttcaaatcgacttttgatatt |
9627479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 107 - 319
Target Start/End: Original strand, 9627141 - 9627348
Alignment:
| Q |
107 |
agtatcacctcttgattcttattacaatatttccactgcaaaaactccaataaagtattctagaccatagggtaannnnnnnnnnnnnataattttcttc |
206 |
Q |
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| T |
9627141 |
agtatcacctcttgattcttattatttcatttccaccgcaaaaactccaataaagtattccggaccgtagggtaaattttattt-----taagtttcttc |
9627235 |
T |
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| Q |
207 |
tttaaacttctcaatcattaaataattatcttcatattttatgaagacaactttgagcatgaaaatattagaacccggatatatcttttcattagcatat |
306 |
Q |
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| T |
9627236 |
tttaaacttctcaatcattaaatcattatctttatatcttatgaagacaactttgagcatgaaaatattagaacccggatataccctttcattagcatat |
9627335 |
T |
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| Q |
307 |
cgttcaaaaattt |
319 |
Q |
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| T |
9627336 |
tgttcaaaaattt |
9627348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 9641875 - 9641935
Alignment:
| Q |
200 |
tttcttctttaaacttctcaatcattaaataattatcttcatattttatgaagacaacttt |
260 |
Q |
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| T |
9641875 |
tttcttctttaaacttctcaatcattaaatcattatctgcatattttatgaagacaacttt |
9641935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 1291109 - 1291056
Alignment:
| Q |
322 |
tcttctttcgaactaacttccaccatacaaatatcagcctctatgtagttagac |
375 |
Q |
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| T |
1291109 |
tcttctttagaagtaacctccaccatacacatatcgggctctatgtagttagac |
1291056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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