View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_15 (Length: 518)
Name: NF1320_low_15
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 53053610 - 53053348
Alignment:
| Q |
6 |
aggagcagagacaaatgtttgttgaaacttctgattcacggcagaacgaaccaattgttcgacattggggcatacattgttatagaaaccacgagtgagt |
105 |
Q |
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| T |
53053610 |
aggagcagtgacaaatgtttgttgaaacttctgattcacggcagaacgaaccaattgttcgacattggggcatacattgttatagaaaccacgagtgagt |
53053511 |
T |
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| Q |
106 |
tgagctgagcttgtagtagctgtgaggagaagaagcaatgacaagaagacaaagcttggagcttccattgctaatgaatgttctgttttgttgctacaat |
205 |
Q |
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| T |
53053510 |
tgagctgagcttgtagtagctgtgaggagaagaagcaatgacaagaagacaaagcttggagcttccattgctaatgaatgttctgttttgttgctacaat |
53053411 |
T |
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| Q |
206 |
tgttgtttgcaacacagttatttatagttagttaatatggcactaacttgagctagcttatgc |
268 |
Q |
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| T |
53053410 |
tgttgtttgcaacacagttatttatagttagttaatatggcactaacttgagctagcttatgc |
53053348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 328 - 490
Target Start/End: Complemental strand, 53053288 - 53053126
Alignment:
| Q |
328 |
gggttacacttttgaaggggcatgattgaagaataattgattgatgagaatcaaaacaaaagtctgttacatggacagtctggctagagtgatataattt |
427 |
Q |
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| T |
53053288 |
gggttacacttttgaaggggcatgattaaagaataattgattgatgagaatcaaaacgaaagtctgttacatggacagtctggctagagtgatataattt |
53053189 |
T |
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| Q |
428 |
ttatttaagagtatgtgtaatattgttatgttatggactaaaggatgattggggatacaatat |
490 |
Q |
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| T |
53053188 |
ttatttaagagtatgtgtcatattgctatgttatggactaaaggatgattggggttacaatat |
53053126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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