View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_17 (Length: 488)
Name: NF1320_low_17
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 475
Target Start/End: Complemental strand, 33645036 - 33644591
Alignment:
| Q |
30 |
gcaactacattgttcctctctatccctacaaagaaatagagaaagccacaaattttttctcggaaaaacacaggttaggaaccggtgcttatggcacggt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33645036 |
gcaactacattgttcctctctatccctacaaagaaatagagaaagccacaaattttttctcggaaaaacacaggttaggaaccggtgcttatggcacggt |
33644937 |
T |
|
| Q |
130 |
ttacgccggaaaccttcacagtgatgaattggttgctatnnnnnnnntcaggtatagagacaccaacagtgttgaccaagttatgaatgaaatcaagctc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644936 |
ttacgccggaaaccttcacagtgatgaattggttgctataaaaaaaatcaggtatagagacaccaacagtgttgaccaagttatgaatgaaatcaagctc |
33644837 |
T |
|
| Q |
230 |
ctttcttcggttagtcacccaaatttagtacgccttttaggttgttgcatagaaaaaggagagcatatacttgtttatgagtatatgccaaatggaacac |
329 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644836 |
ctttcttcggttagtcacccgaatttagtacgccttttaggttgttgcatagaaaaaggagagcatatacttgtttatgagtatatgccaaatggaacac |
33644737 |
T |
|
| Q |
330 |
tatcgcaacatttacaaagagaaagaggtggagtacttccttggacaataagactcactattgcctctgaaactgctaatgctatagcatttctccattc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644736 |
tatcgcaacatttacaaagagaaagaggtggagtacttccttggacaataagactcaccattgcctctgaaactgctaatgctatagcatttctccattc |
33644637 |
T |
|
| Q |
430 |
ttcaaatcctccaatttatcatagagacataaaatctagtaatata |
475 |
Q |
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| T |
33644636 |
ttcaaatcctccaatttatcatagagacataaaatctagtaatata |
33644591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 38 - 480
Target Start/End: Original strand, 6934871 - 6935316
Alignment:
| Q |
38 |
attgttcctctctatccctacaaagaaatagagaaagccacaaattttttctcggaaaaacacaggttaggaaccggtgcttatggcacggtttacgccg |
137 |
Q |
| |
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||||| |||||||| | |||||||| ||||| ||||| ||||||| |||||| || ||||| | | | |||||||| |||| || || || || || | |
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| T |
6934871 |
attgtgcctctctacgcttacaaagacatagaaaaagctacaaattctttctctgataaacatatgctgggaaccggggctttcggtacagtctatgctg |
6934970 |
T |
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| Q |
138 |
gaaaccttcacagtgatgaattggttgctatnnnnnnnntcaggtatagagacaccaacagtgttgaccaagttatgaatgaaatcaagctcctttcttc |
237 |
Q |
| |
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|||| ||||||| |||||| || ||||| || | ||| ||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| |
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| T |
6934971 |
gaaaacttcacaatgatgagtttgttgcaataaagaagataaggcatagagacaccaatagtgtagatcaagtcatgaatgagatcaagctcctttcttc |
6935070 |
T |
|
| Q |
238 |
ggttagtcacccaaatttagtacgccttttaggttgttgcatagaaaaaggagagcatatacttgtttatgagtatatgccaaatggaacactatcgcaa |
337 |
Q |
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| T |
6935071 |
ggtcagtcacccgaatttggttcgcctcctaggttgctgcattgaggagggagaacagatacttgtttatgaatatatgccacatggaacgctttctcaa |
6935170 |
T |
|
| Q |
338 |
catttacaaagagaaagaggtggagtacttccttggacaataagactcactattgcctctgaaactgctaatgctatagcatttctccattcttcaa--- |
434 |
Q |
| |
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||||| || ||||| || ||| || ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||| | |||||||||| ||| |
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| T |
6935171 |
catttgcagagagagaggggtaaaggtcttccgtggacaatacgactcaccattgcttctgaaactgctaatgctatagcttatctccattctgcaattc |
6935270 |
T |
|
| Q |
435 |
atcctccaatttatcatagagacataaaatctagtaatatattctt |
480 |
Q |
| |
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||||||||||||| || |||||||||||||| || |||||| |||| |
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| T |
6935271 |
atcctccaatttaccacagagacataaaatccagcaatatactctt |
6935316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 52109211 - 52109334
Alignment:
| Q |
35 |
tacattgttcctctctatccctacaaagaaatagagaaagccacaaattttttctcggaaaaacacaggttaggaaccggtgcttatggcacggtttacg |
134 |
Q |
| |
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|||| ||||||| |||||||||||||||| || || |||||||||||| ||| || || ||||| ||||| ||||| || || ||||| || ||||| |
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| T |
52109211 |
tacagtgttcctatctatccctacaaagacatcgaaaaagccacaaatagtttttcagagaaacaaaggttgggaacaggagcatatggtacagtttatt |
52109310 |
T |
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| Q |
135 |
ccggaaaccttcacagtgatgaat |
158 |
Q |
| |
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| T |
52109311 |
ctggaaaactttacaatgatgaat |
52109334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 52109377 - 52109434
Alignment:
| Q |
201 |
ttgaccaagttatgaatgaaatcaagctcctttcttcggttagtcacccaaatttagt |
258 |
Q |
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|||| ||||| |||||||| ||||||||| |||| || ||||||||||| |||||||| |
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| T |
52109377 |
ttgaacaagtcatgaatgagatcaagctcatttcctctgttagtcaccccaatttagt |
52109434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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