View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_19 (Length: 468)
Name: NF1320_low_19
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5159540 - 5159249
Alignment:
| Q |
1 |
ttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn-gagagtacatagttagagatataattttcaataaataaatctgtaagaacta |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5159540 |
ttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatataattt-caataaataaatctgtaagaacta |
5159442 |
T |
|
| Q |
100 |
ttccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcatatgacaaaacaagaagatgaagtctcaaattct |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159441 |
ttccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatgacaaaacaagaagatgaagtctcaaattct |
5159342 |
T |
|
| Q |
199 |
tggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
5159341 |
tggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 160 - 292
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
160 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
|
| Q |
260 |
agtcggcatactatcgcgtcaaagaggaaatgg |
292 |
Q |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 5195173 - 5195065
Alignment:
| Q |
1 |
ttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn----gagagtacatagttagagatataattttcaataaataaatctgtaagaa |
96 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5195173 |
ttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagagatataattttcaataaataaatcggtaagaa |
5195074 |
T |
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| Q |
97 |
ctattcccc |
105 |
Q |
| |
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||||||||| |
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| T |
5195073 |
ctattcccc |
5195065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
241 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
292 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
230 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
291 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5181775 - 5181710
Alignment:
| Q |
1 |
ttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5181775 |
ttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4843096 - 4843133
Alignment:
| Q |
1 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
4843096 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
4843133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
191 |
caaattcttggagaatcctagatgacaaattggtat |
226 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
49 |
agagtacatagttagagatataattttcaataaat |
83 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
293 |
aaagagtattatgtggagagtgacaaaacatattttttc |
331 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
293 |
aaagagtattatgtggagagtgacaaaacatattt |
327 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5172526 - 5172489
Alignment:
| Q |
1 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
38 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||| |
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| T |
5172526 |
ttaacattttcaattttttcaagtgttgaacatctgca |
5172489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 5212748 - 5212716
Alignment:
| Q |
5 |
cattttcaagtttttcaaatgttgaacatctgc |
37 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
5212748 |
cattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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