View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_low_2 (Length: 683)
Name: NF1320_low_2
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 31992083 - 31991909
Alignment:
| Q |
16 |
gagatgaatataatcatgggacactccaatattgtctttaattttctgttgtacgcgtaaaactaccagcaccactgaatactgcgacaaaagaactgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31992083 |
gagatgaatataatcatgggacactcaaatattgtctttaattttctgttgtaagcgtaaaactaccagcaccactgaatactgcgacaaaagaactgat |
31991984 |
T |
|
| Q |
116 |
attggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcattgttcaccatagaactggtgag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31991983 |
attggaagtcgatatagcccttaacatgcaactctgcaagacaaagaacgcattgttcaccatagaactggtgag |
31991909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 184 - 462
Target Start/End: Original strand, 31985609 - 31985877
Alignment:
| Q |
184 |
tggtgaggccattccttggtgttgctgcttcgtttgagaacttgaaaacttgtgactgcagagaattatatatgcgtattgattttgcaagaagttttta |
283 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31985609 |
tggtgtggccattgcttggtgttgctgctt-gtttgagaacttgaaaacttgtgacttcagagaattacgt---cgtattgattttgcaagaagtttttg |
31985704 |
T |
|
| Q |
284 |
ggattttcgttgtatggtttcgatcgttgaatccaaaaatatttcaccaaaatatattttggaagggaggagaagataatgtagggttatgtattatgta |
383 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||| | | |||||||||||||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
31985705 |
acattttcattgaatggtttccatcgttgaatccaaaaaaaatccaccaaaatatattttggaaaggaggaaaagataatgtagcgttatgta------- |
31985797 |
T |
|
| Q |
384 |
tttatgtcaaatattttatgtttgt--ccccgtacacataactcagttggtaaggacaatgcattgctatatgcgcgagac |
462 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||| |||||| ||| ||| || ||||||| |||||||| ||||| |
|
|
| T |
31985798 |
-ttatgtcaaatattttatgtctgtccccccgtaaacattactcagctggcaagaacgatgcattattatatgcgtgagac |
31985877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 630
Target Start/End: Original strand, 31985930 - 31985991
Alignment:
| Q |
569 |
ataaatgtacaaacattgtgatgtaaaaatattatgatatataaatacaattatttatttat |
630 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31985930 |
ataaatgtactaccaatgtgatgtaaaaatattatgacatataaatacaattatatatttat |
31985991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 31992736 - 31992695
Alignment:
| Q |
83 |
agcaccactgaatactgcgacaaaagaactgatattggaagt |
124 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
31992736 |
agcaccactcaataccgcgacaaaagaactaatattggaagt |
31992695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 49067511 - 49067628
Alignment:
| Q |
75 |
aaactaccagcaccactgaatactgcgacaaaagaactgatattggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcattgttca |
174 |
Q |
| |
|
||||||| |||||| || ||||| ||||||| |||||||||||||||||| |||||||||||| || |||||| ||||||||| |||| ||| | || |
|
|
| T |
49067511 |
aaactactagcaccgctcaataccgcgacaacagaactgatattggaagtggatatagcccttcgcaagcaactttgcaagacatagaatacatcatcca |
49067610 |
T |
|
| Q |
175 |
ccatagaactggtgaggc |
192 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
49067611 |
ccatagaagtggtgaggc |
49067628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 35750266 - 35750295
Alignment:
| Q |
418 |
cataactcagttggtaaggacaatgcattg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35750266 |
cataactcagttggtaaggacaatgcattg |
35750295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University