View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_low_20 (Length: 453)
Name: NF1320_low_20
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_20 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 83 - 344
Target Start/End: Original strand, 19456662 - 19456923
Alignment:
| Q |
83 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
182 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| ||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19456662 |
gaagatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagga |
19456761 |
T |
|
| Q |
183 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
282 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19456762 |
aatggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaattgaactcc |
19456861 |
T |
|
| Q |
283 |
tgcagtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttt |
344 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
19456862 |
tgcagtaaaggttagtgaaactgctttcagtttaattgatcaaactatagagtattttgttt |
19456923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 75 - 303
Target Start/End: Original strand, 19394507 - 19394736
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
19394507 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
19394606 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
19394607 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
19394706 |
T |
|
| Q |
275 |
tgagctcctg-cagtaaaggttagtgaaac |
303 |
Q |
| |
|
|||| ||||| || | |||||||||||||| |
|
|
| T |
19394707 |
tgaggtcctgccaattaaggttagtgaaac |
19394736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 75 - 303
Target Start/End: Original strand, 19465710 - 19465939
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| || | |||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19465710 |
cagagaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttct |
19465809 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19465810 |
tattaggaaatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgcagaaat |
19465909 |
T |
|
| Q |
275 |
tgagctcct-gcagtaaaggttagtgaaac |
303 |
Q |
| |
|
||||||||| |||| |||||||||||||| |
|
|
| T |
19465910 |
tgagctcctaccagttaaggttagtgaaac |
19465939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 18017380 - 18017655
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| || | |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18017380 |
cagagaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttct |
18017479 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
18017480 |
cattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgtagaagt |
18017579 |
T |
|
| Q |
275 |
tgagctcctgc-agtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttttattc |
349 |
Q |
| |
|
|||||| |||| | ||||| |||||||| |||||| |||| || |||| | |||||||||||| ||||||||| |
|
|
| T |
18017580 |
tgagcttctgctaataaagattagtgaacgtactttaagttgaattgatcatgatatagagtattttgttttattc |
18017655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 75 - 336
Target Start/End: Original strand, 19382251 - 19382514
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||| ||||||| ||| || ||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||| ||||| |
|
|
| T |
19382251 |
cagagaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttctttatttct |
19382350 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
19382351 |
tattaggaaatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
19382450 |
T |
|
| Q |
275 |
tgagctcctg-cagtaaaggttagtgaaa-ctactttcagtttaagtgatgaaactatagagta |
336 |
Q |
| |
|
|||||| ||| |||| ||||||||||||| |||||| ||||| | | || ||||||||||||| |
|
|
| T |
19382451 |
tgagctgctgccagttaaggttagtgaaacctacttcaagttttattaatcaaactatagagta |
19382514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 18872500 - 18872310
Alignment:
| Q |
95 |
tctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatg |
194 |
Q |
| |
|
||||||| ||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18872500 |
tctataagagaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatg |
18872401 |
T |
|
| Q |
195 |
catactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18872400 |
catacttttggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttcgcagatattgagctcctgc |
18872310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 19352750 - 19352960
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19352750 |
cagagaatgaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttct |
19352849 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
19352850 |
tattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgtagaata |
19352949 |
T |
|
| Q |
275 |
tgagctcctgc |
285 |
Q |
| |
|
|||||| |||| |
|
|
| T |
19352950 |
tgagcttctgc |
19352960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 17951180 - 17951446
Alignment:
| Q |
74 |
gcagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttc |
173 |
Q |
| |
|
|||||||| || | |||||| ||| |||||||||||||||| || || |||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
17951180 |
gcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttc |
17951279 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaa |
273 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
17951280 |
ttattcgaaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttttgcagaag |
17951379 |
T |
|
| Q |
274 |
ttgagctcctgc-agtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtattt |
339 |
Q |
| |
|
||||||| |||| || ||||||||||||| ||||||| |||| || |||| | |||||||||||| |
|
|
| T |
17951380 |
ttgagcttctgctagaaaaggttagtgaacctactttaagttgaattgatcacgatatagagtattt |
17951446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 78 - 265
Target Start/End: Complemental strand, 17726176 - 17725989
Alignment:
| Q |
78 |
agaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcat |
177 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
17726176 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
17726077 |
T |
|
| Q |
178 |
taggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagcttt |
265 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
17726076 |
tagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
17725989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 78 - 265
Target Start/End: Complemental strand, 19027405 - 19027218
Alignment:
| Q |
78 |
agaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcat |
177 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
19027405 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
19027306 |
T |
|
| Q |
178 |
taggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagcttt |
265 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
19027305 |
tagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
19027218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 74 - 314
Target Start/End: Original strand, 19401083 - 19401324
Alignment:
| Q |
74 |
gcagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttc |
173 |
Q |
| |
|
|||||||| |||| ||| || |||||||||||||| ||||| || || |||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
19401083 |
gcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttc |
19401182 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaa |
273 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19401183 |
tcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaag |
19401282 |
T |
|
| Q |
274 |
ttgagctcctgc-agtaaaggttagtgaaactactttcagtt |
314 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||| ||| |||| |
|
|
| T |
19401283 |
ttgagcttttgctagtaaaggttagtgaacctaatttaagtt |
19401324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 18109801 - 18110028
Alignment:
| Q |
88 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
187 |
Q |
| |
|
|||||| |||||||||||||||||||| || || |||||||| |||||||||| |||||| |||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
18109801 |
tgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgttatcaggaaatgg |
18109900 |
T |
|
| Q |
188 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-a |
286 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||| || ||| ||||||| |||| | |
|
|
| T |
18109901 |
aggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttgagcttctgcta |
18110000 |
T |
|
| Q |
287 |
gtaaaggttagtgaaactactttcagtt |
314 |
Q |
| |
|
||||||||||||||| ||| ||| |||| |
|
|
| T |
18110001 |
gtaaaggttagtgaacctaatttaagtt |
18110028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 75 - 280
Target Start/End: Original strand, 17943312 - 17943517
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
17943312 |
cagagaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttt |
17943411 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| || |||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
17943412 |
tattagaaaatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaaac |
17943511 |
T |
|
| Q |
275 |
tgagct |
280 |
Q |
| |
|
|||||| |
|
|
| T |
17943512 |
tgagct |
17943517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 78 - 303
Target Start/End: Original strand, 18166517 - 18166743
Alignment:
| Q |
78 |
agaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcat |
177 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
18166517 |
agaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
18166616 |
T |
|
| Q |
178 |
taggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattga |
277 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| || |||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| |
|
|
| T |
18166617 |
tagaaaatggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttctcagaaactga |
18166716 |
T |
|
| Q |
278 |
gctcctgc-agtaaaggttagtgaaac |
303 |
Q |
| |
|
| || ||| || |||||||||||||| |
|
|
| T |
18166717 |
gttcatgctggttaaggttagtgaaac |
18166743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 25464425 - 25464610
Alignment:
| Q |
89 |
gatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgga |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
25464425 |
gatgactctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatgga |
25464524 |
T |
|
| Q |
189 |
ggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25464525 |
ggcatgcatactttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaaccactttcgcagaaat |
25464610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 98 - 285
Target Start/End: Original strand, 19377000 - 19377187
Alignment:
| Q |
98 |
ataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcat |
197 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19377000 |
ataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggcatgcat |
19377099 |
T |
|
| Q |
198 |
actttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
285 |
Q |
| |
|
|||||| |||||| || ||||||||||||| |||||||| |||||||| ||||||||||| || |||| ||||||| ||||||||| |
|
|
| T |
19377100 |
actttcagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaacaggtttcaaagaaattaagctcctgc |
19377187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 19335378 - 19335580
Alignment:
| Q |
83 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
182 |
Q |
| |
|
|||| ||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
19335378 |
gaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaa |
19335477 |
T |
|
| Q |
183 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
282 |
Q |
| |
|
||||||||||||| |||||||||||| | ||| |||| ||||||||| ||||||| |||||||| |||||||| || | ||| |||||||||||||| |
|
|
| T |
19335478 |
aatggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagttgaacatgtttaaaagaaattgagctcc |
19335577 |
T |
|
| Q |
283 |
tgc |
285 |
Q |
| |
|
||| |
|
|
| T |
19335578 |
tgc |
19335580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 92 - 299
Target Start/End: Complemental strand, 14895015 - 14894807
Alignment:
| Q |
92 |
gactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggc |
191 |
Q |
| |
|
|||||||||| ||||||| ||||||| || |||||| |||||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
14895015 |
gactctataagagaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggc |
14894916 |
T |
|
| Q |
192 |
atgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaa |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| | |||| | | |||||||||||| || ||| | |
|
|
| T |
14894915 |
atgcatactttcggtttattgatggagtaggtgacaagctctatgttactttgatcccaaagttaaacaactttggaaaaaattgagctccggctagtta |
14894816 |
T |
|
| Q |
291 |
aggttagtg |
299 |
Q |
| |
|
||||||||| |
|
|
| T |
14894815 |
aggttagtg |
14894807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 18117314 - 18117517
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||| ||||||| ||| |||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
18117314 |
cagagaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatgtttct |
18117413 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | || |||| |||||| | |||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18117414 |
tattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgctgaaac |
18117513 |
T |
|
| Q |
275 |
tgag |
278 |
Q |
| |
|
|||| |
|
|
| T |
18117514 |
tgag |
18117517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 380
Target Start/End: Original strand, 16678589 - 16678871
Alignment:
| Q |
99 |
taaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcata |
198 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16678589 |
taaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacacata |
16678688 |
T |
|
| Q |
199 |
ctttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcct-gcagtaaaggttag |
297 |
Q |
| |
|
|| || ||||| ||||||| || |||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| |||||||| |
|
|
| T |
16678689 |
ctatcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggttag |
16678788 |
T |
|
| Q |
298 |
tgaaactactttcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttcattgatca |
380 |
Q |
| |
|
|| | ||| ||| ||||| | | || ||||||||||||| || ||| ||||| || ||||| |||||||| ||| |||||||| |
|
|
| T |
16678789 |
tggacctattttaagttttattaatcaaactatagagtaatttgttgtattcgtagtttatgtatgacatcttttattgatca |
16678871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 18148175 - 18148405
Alignment:
| Q |
74 |
gcagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttc |
173 |
Q |
| |
|
|||||||| |||| |||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
18148175 |
gcagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttc |
18148274 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaa |
273 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| | || |||| |||||| | |||||||| ||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
18148275 |
ttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgccgaag |
18148374 |
T |
|
| Q |
274 |
ttgagctcctgc-agtaaaggttagtgaaac |
303 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| |
|
|
| T |
18148375 |
ctgagctcctgctagttaaggttagttaaac |
18148405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 19426051 - 19426231
Alignment:
| Q |
78 |
agaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcat |
177 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || || |
|
|
| T |
19426051 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttccttat |
19426150 |
T |
|
| Q |
178 |
taggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| | || |||| |||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
19426151 |
tagaaaatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttactttgatcgtaaagttaaa |
19426231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 19355081 - 19355283
Alignment:
| Q |
83 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
182 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||| | |
|
|
| T |
19355081 |
gaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttctttgtttctaattagaa |
19355180 |
T |
|
| Q |
183 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
282 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| |||||||| ||||||| |||||||| ||||||||||| | ||| |||||||||||||| |
|
|
| T |
19355181 |
aatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaacgggtttaaaagaaattgagctcc |
19355280 |
T |
|
| Q |
283 |
tgc |
285 |
Q |
| |
|
||| |
|
|
| T |
19355281 |
tgc |
19355283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 75 - 303
Target Start/End: Original strand, 19462538 - 19462767
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
19462538 |
cagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgtttct |
19462637 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| | || |||| |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
19462638 |
tattcggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgcagaaac |
19462737 |
T |
|
| Q |
275 |
tgagctcctgc-agtaaaggttagtgaaac |
303 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| |
|
|
| T |
19462738 |
tgagctcctgctagttaaggttagttaaac |
19462767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 19438303 - 19438497
Alignment:
| Q |
74 |
gcagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttc |
173 |
Q |
| |
|
|||||||| |||| |||||| ||||||| ||| || ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
19438303 |
gcagagaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggttctatgtttc |
19438402 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgc |
268 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| | || ||| ||||| | || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
19438403 |
ttattaggaaatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagctttcgc |
19438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 74 - 298
Target Start/End: Original strand, 18104853 - 18105078
Alignment:
| Q |
74 |
gcagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttc |
173 |
Q |
| |
|
|||||||| ||| |||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| ||| || | |||||||| |||||| |||||| |
|
|
| T |
18104853 |
gcagagaatgaaaatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatgtttc |
18104952 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaa |
273 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| | || |||| |||||| | |||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18104953 |
ttattaggaaatggaggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgccgaaa |
18105052 |
T |
|
| Q |
274 |
ttgagctcctgc-agtaaaggttagt |
298 |
Q |
| |
|
||||||||||| ||| ||||||||| |
|
|
| T |
18105053 |
ctgagctcctgctagttaaggttagt |
18105078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 280
Target Start/End: Original strand, 19415557 - 19415747
Alignment:
| Q |
90 |
atgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggag |
189 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||| | ||||| ||||| ||||| || |
|
|
| T |
19415557 |
atgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcag |
19415656 |
T |
|
| Q |
190 |
gcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagct |
280 |
Q |
| |
|
|||||||||||| |||||||| || |||| | | ||| |||||||| |||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
19415657 |
gcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagct |
19415747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 298
Target Start/End: Complemental strand, 24493377 - 24493200
Alignment:
| Q |
120 |
ggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcatactttcggtttatatatggagt |
219 |
Q |
| |
|
||||||||||||| |||| || |||||| ||| ||| |||||| |||| ||||| ||||||||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
24493377 |
ggatgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagt |
24493278 |
T |
|
| Q |
220 |
aggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaaaggttagt |
298 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||| ||||||||| |||||| |||| |||||| ||| ||||||||| |
|
|
| T |
24493277 |
gggtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaaaatgagttcctgctagttaaggttagt |
24493200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 24496823 - 24496662
Alignment:
| Q |
114 |
atctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcatactttcggtttatata |
213 |
Q |
| |
|
||||||| |||||||||||||||| | |||||| ||| ||| |||||| ||||||||| |||||||||||| ||||| |||||| || |||||| | |
|
|
| T |
24496823 |
atctaggcatgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg-ggcatacatactatcagtttatcga |
24496725 |
T |
|
| Q |
214 |
tggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
285 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||| |
|
|
| T |
24496724 |
tg---------acaagctctatgtaactttgatggtaaatttaaataattttcactaaaattgagctcctgc |
24496662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 75 - 380
Target Start/End: Original strand, 8460924 - 8461230
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8460924 |
cagagaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttct |
8461023 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||| | |||||||||||||||| || ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8461024 |
tattaggaaatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaat |
8461123 |
T |
|
| Q |
275 |
tgagctcctgc-agtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttca |
373 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||| ||||| | ||| | || ||||| ||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8461124 |
tgagctcctgctagcaaaggttagtgaacctactttaagttttattgaacacaccatagaatattttgttttatgcataatttatctatgacatgtttca |
8461223 |
T |
|
| Q |
374 |
ttgatca |
380 |
Q |
| |
|
||||||| |
|
|
| T |
8461224 |
ttgatca |
8461230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 95 - 402
Target Start/End: Complemental strand, 2709195 - 2708889
Alignment:
| Q |
95 |
tctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatg |
194 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
2709195 |
tctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggaggaaca |
2709096 |
T |
|
| Q |
195 |
catactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaaagg |
293 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||| ||||| || | ||| |||| |
|
|
| T |
2709095 |
catactatcggtttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttctacaagttaagg |
2708996 |
T |
|
| Q |
294 |
ttagtgaaactactt-tcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttcattgatcagagactatagag |
392 |
Q |
| |
|
|||||||| |||||| |||||| | |||| |||||||| | ||||| |||||||||| ||| ||| |||||||| ||| ||||||| | |||| |||| |
|
|
| T |
2708995 |
ttagtgaacctacttcacagttt-attgatcaaactatacaatattttgttttattcacaatatatgtatgacatgttttattgatc--aaactagagag |
2708899 |
T |
|
| Q |
393 |
tattttgttt |
402 |
Q |
| |
|
|||||||||| |
|
|
| T |
2708898 |
tattttgttt |
2708889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 15536891 - 15537101
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
15536891 |
cagagaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttctttgtttct |
15536990 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
274 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
15536991 |
tattagaaaatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcacagaaat |
15537090 |
T |
|
| Q |
275 |
tgagctcctgc |
285 |
Q |
| |
|
||||||||||| |
|
|
| T |
15537091 |
tgagctcctgc |
15537101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 78 - 280
Target Start/End: Complemental strand, 13665587 - 13665385
Alignment:
| Q |
78 |
agaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcat |
177 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
13665587 |
agaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttctttgtttcttat |
13665488 |
T |
|
| Q |
178 |
taggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattga |
277 |
Q |
| |
|
||| |||||||||||||||| |||||||||| | || |||| || ||||| |||||| | |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
13665487 |
tagaaaatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttcgcaggaactga |
13665388 |
T |
|
| Q |
278 |
gct |
280 |
Q |
| |
|
||| |
|
|
| T |
13665387 |
gct |
13665385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 21944 - 22127
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||| || ||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
21944 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttct |
22043 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
22044 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 2212 - 2029
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
2212 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
2113 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
2112 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 2742 - 2558
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatggggg-atttgtggttctttgtttc |
173 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||| || ||||| ||||||||||||| ||||| |||||| |||| |||||||||||||| |
|
|
| T |
2742 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttc |
2643 |
T |
|
| Q |
174 |
tcattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
2642 |
tcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 6761 - 6944
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
6761 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
6860 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
6861 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
6944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 11859 - 12042
Alignment:
| Q |
75 |
cagagaacgaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttct |
174 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
11859 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
11958 |
T |
|
| Q |
175 |
cattaggaaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
11959 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
12042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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