View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_28 (Length: 423)
Name: NF1320_low_28
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 6933831 - 6933979
Alignment:
| Q |
31 |
aaataaagtaatctttgcacaattaccagaacagtgtt---ttggttttaaggtattcggcaatctatatagagtatattctaagtacacaaatcaaatt |
127 |
Q |
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| T |
6933831 |
aaatgaagtaatctttgcacaattaccagaacagtgttaatttggttttaaggtattcggcaatctatatagagtatattccaagtacacaaatcaaatt |
6933930 |
T |
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| Q |
128 |
atgataagtagggactattattgaccaaattacaaagtgatcattttga |
176 |
Q |
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| T |
6933931 |
atgataagtagggactattattgaccaaattacaaagtgatcattttga |
6933979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 6934081 - 6934162
Alignment:
| Q |
254 |
attgtaaaagaatagcagaattattgttaaacttctggat----actcacacctggatccatttgttttcagttcacaccta |
331 |
Q |
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| T |
6934081 |
attgtaaaagaatagcagaattattgttaaacttctgcatactcactcacacctggatccatttgttttcagttcccaccta |
6934162 |
T |
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