View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_low_31 (Length: 419)
Name: NF1320_low_31
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 42787686 - 42787305
Alignment:
| Q |
29 |
atatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtatagtctttagtaaataaatatata |
128 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
42787686 |
atatagactacatatatcatttattgaatggatctacaaaattgatttttgcttataatagtgaccagatggtgtatagt-tttagtaaataaatatata |
42787588 |
T |
|
| Q |
129 |
accataataacnnnnnnngttatttttcaaaatattttggtatgattaccgtgacaattctatatttggtatggctatgtgttttacaaagttagtgttt |
228 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42787587 |
accataataactttttttgttatttttcaaaatattttggtatgattaccgtgacaattctatatttggtatggctatgtgttttacaaagttagtgttt |
42787488 |
T |
|
| Q |
229 |
tttgtcttcattccnnnnnnnnnngaagttagtgttttctttacttgatgtttcatgccagcaattttcctttatatatctgataatatgttgaaactaa |
328 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42787487 |
tttgtcttcattccaaaaaaaaaa-aagttagtgttttctttacttgatgtttcatgccagcaattttcctttatatatctaataatatgttgaaactaa |
42787389 |
T |
|
| Q |
329 |
tataccttcgtgtcatcattctgttagtagttcaggtcttctcatttttctggtgtcttaaaatttatttgaaaatattcttgg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42787388 |
tataccttcgtgtcatcattctgttagtagttcaggtcttctcatttttctggtgtcttaaaatttatttgaaaatattattgg |
42787305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 25713768 - 25713824
Alignment:
| Q |
29 |
atatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttata |
85 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
25713768 |
atatagaccacatatatcatttattgaatgaatctaaaaaatcaacttttgtttata |
25713824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 14351333 - 14351274
Alignment:
| Q |
29 |
atatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagta |
88 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| | ||| ||||| |||||||||||| |||| |
|
|
| T |
14351333 |
atatagaccacatacatcatttattgaatgaagctataaaatagacttttgtttaaagta |
14351274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 2254023 - 2254084
Alignment:
| Q |
29 |
atatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagt |
90 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || || ||||| ||||||||||||| |||| |
|
|
| T |
2254023 |
atatagactacatatatcatttattgaatgaatttaaaaaataaacttttgtttataatagt |
2254084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 20598331 - 20598383
Alignment:
| Q |
33 |
agaccacatatatcatttatcgaatggatctacaaaattgacttttgtttata |
85 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || || || ||||||||||| |
|
|
| T |
20598331 |
agaccacatatatcatttattgaatgaatctaaaacatggatttttgtttata |
20598383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 15439924 - 15439870
Alignment:
| Q |
37 |
cacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtg |
91 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||| || ||||||||||| ||||| |
|
|
| T |
15439924 |
cacatatatcattaattgaatgtatctacaaaatagatttttgtttatattagtg |
15439870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 7410633 - 7410556
Alignment:
| Q |
31 |
atagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtatagt |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||||| ||||| | || |||||||||| |
|
|
| T |
7410633 |
atagaccacatatatcatttattgaatgaatctaataaattaaattttgcttataatagtgactggagggtgtatagt |
7410556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 29765734 - 29765811
Alignment:
| Q |
29 |
atatagaccacatatatcatttatcgaatggatctacaaaattgacttttgtttatagtagtgccgagatggtgtata |
106 |
Q |
| |
|
||||||||| ||||||||| |||| |||| ||||| ||| |||| ||||| ||||| | ||| |||||||||||||| |
|
|
| T |
29765734 |
atatagaccgcatatatcacttattcaatgaatctaaaaagttgatttttggttataattgtgacgagatggtgtata |
29765811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University