View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_low_34 (Length: 393)
Name: NF1320_low_34
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 8177387 - 8177671
Alignment:
| Q |
30 |
tcttgctcaaccaaaggagtaaatgtaggatcctgaaatcataacaaacatgccatatatattttaagaatattagaacatatatgctttgcatattaat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8177387 |
tcttgctcaaccaaaggagtaaatgtaggatcctgaaatcataacaaacatgccatat----ttttagaatattagaacat----gctttgcatattaat |
8177478 |
T |
|
| Q |
130 |
taaaaatatttctttgaagaaaaactgtttactacatttactatttagcagaagtctatagttatagttaaacagtgaggaaacaatatacataaaaatc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8177479 |
taaaaatatttctttgaagaaaaactgtttactacatttactatttagcagaagtctatagtta--gttaaacagtgaggaaacaatatacataaaaatc |
8177576 |
T |
|
| Q |
230 |
taaaataatatatcaaaattcaaattgagaattcaatttgtgatcctttttacagatcacaactttacatactacaaaaagaagtcaatatcaat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8177577 |
taaaataatatatcaaaattcaaattgagaattcaatttgtgatcctttttacagatcacaactttacatactacaaaaagaagtcaatatcaat |
8177671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University