View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_39 (Length: 377)
Name: NF1320_low_39
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 364
Target Start/End: Complemental strand, 48374545 - 48374223
Alignment:
| Q |
43 |
acgagtaatgaacttttatatttcactataactttggtagacgtttaatcctttggataagcttttatctatgatacgcccaccctccattaggtaagca |
142 |
Q |
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| T |
48374545 |
acgagtaacgaacttttatatttcattataactttggtagacgtttaatcctttggataagcttttatctatgatacgcccgccctccattaggtaagca |
48374446 |
T |
|
| Q |
143 |
aatagtcgctacttgagaattaacatgaacttcaacggctttgtatctatgtgttcgagctaactgttatctttcgatgctcccgtaagttttt-gcacg |
241 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
48374445 |
aatagtcgctccttgagaattaacatgaacttcaacgtctttgtatctatgcgtccgagctaactgttatctttcgatgctcccataagtttttagcacg |
48374346 |
T |
|
| Q |
242 |
tgatactccccatcaccctccattaggaaagcaaagagccactacttgagaatcaacatgaacctcgacggctttatatctatgcatccaagctaattgt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48374345 |
tgatactccccatcaccctccattaggaaagcaaagagccgctacttgagaatcagcatgaacctcgacggctttatatctatgtgtccaagctaattgt |
48374246 |
T |
|
| Q |
342 |
aatcttctaatactcctatgcta |
364 |
Q |
| |
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| ||||||||||||||| ||||| |
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| T |
48374245 |
agtcttctaatactcctgtgcta |
48374223 |
T |
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