View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_41 (Length: 373)
Name: NF1320_low_41
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39991993 - 39991774
Alignment:
| Q |
1 |
aaccctaagcaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaaatatgctgnnnnnnnt |
100 |
Q |
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| T |
39991993 |
aaccctaagaaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaaatatgctgaaaaaa-t |
39991895 |
T |
|
| Q |
101 |
aagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgttacattaaacaaaaccaactcactcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
39991894 |
aagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgtgacaataaacaaaaccaactcactcata |
39991795 |
T |
|
| Q |
201 |
agattgaatgaaaattctagg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39991794 |
agattgaatgaaaattctagg |
39991774 |
T |
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