View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_44 (Length: 361)
Name: NF1320_low_44
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 2321658 - 2321318
Alignment:
| Q |
7 |
agggattggtagacaaagatttgctgtcataatctctcttcagaatgtatcacaaccaacatgtaattaagggattcaagtactttatataagtaattaa |
106 |
Q |
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| T |
2321658 |
agggattggtagacaaagatttgctgtcataatctctcttcagaatgtatcacaaccaacatgtaattaagggattcaagtactttatataagtaattaa |
2321559 |
T |
|
| Q |
107 |
gggactcaaggaatattgcatgttcaacatattcctcagaccttggtaaaattagtctttaaatactgtgtttataataacatggctatacaaatagggt |
206 |
Q |
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| T |
2321558 |
gggactcaaggaatattgcatgttcaacatattcctcagaccttggtaaaattagtctttaaatactgtgtttataataacatggctatacaaatagggt |
2321459 |
T |
|
| Q |
207 |
gacatttatagtacacaacatgatgacccttctatctctttctcaacaatgctacttattcctcgtattctcactgcaaacaaattatgcttcacacatc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321458 |
gacatttatagtacacaacatgatgacccttctatctctttctcaacaatgctacttcttcctcgtattctcactgcaaacaaattatgcttcacacatc |
2321359 |
T |
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| Q |
307 |
acaatgtttattctgattttctttttaatcaacaagttagt |
347 |
Q |
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| T |
2321358 |
acaatgtttattctgattttcttttgaatcaacaagttagt |
2321318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 9945034 - 9944817
Alignment:
| Q |
7 |
agggattggtagacaaagatttgctgtcataatctctcttcagaatgtatcacaaccaacatgtaattaagggattcaagtactttatataagtaattaa |
106 |
Q |
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|||| |||| |||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
9945034 |
aggggttggcagacaaagatttgctgtcataacctctattcagaatgtat-acaaccaacatgtaattaagggattcatgcactttatataagtaattaa |
9944936 |
T |
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| Q |
107 |
gggactcaaggaatattgcatgttcaacatattcctcagaccttggtaaaattagtctttaaatactgtgtttataataacatggctatacaaatagggt |
206 |
Q |
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||||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||| ||| | |||||||||||||| ||||||| |||||||||||||| |
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| T |
9944935 |
gggactccaggaatattgcacgttcaacatactcctcataccttagtaaaattagtattttagtactgtgtttataacaacatggttatacaaatagggt |
9944836 |
T |
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| Q |
207 |
gacatttatagtacacaac |
225 |
Q |
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|||||||||||| |||||| |
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| T |
9944835 |
gacatttatagtgcacaac |
9944817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 9934773 - 9934630
Alignment:
| Q |
12 |
ttggtagacaaagatttgctgtcataatctctcttcagaatgtatcacaaccaacatgtaa----ttaaggga-------ttcaagtactttatataagt |
100 |
Q |
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|||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
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| T |
9934773 |
ttggtagacaaagatttgctgtcaaaacctctattcagaatgtatcacaaccaacatgtaattaattaagggattcaactttcaagtactttatacaagt |
9934674 |
T |
|
| Q |
101 |
aattaagggactcaaggaatattgcatgttcaacatattcctca |
144 |
Q |
| |
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|||||| ||| |||| |||||||||| |||||||| |||||||| |
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| T |
9934673 |
aattaaaggattcaatgaatattgcacgttcaacacattcctca |
9934630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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