View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_47 (Length: 350)
Name: NF1320_low_47
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 1442188 - 1442498
Alignment:
| Q |
28 |
cataagcaatcattggaaacccccaagctcaagttaaatgggggagcataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagaga |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1442188 |
cataagcaatcattggaaacccccaagctcaagttaaatggaggagcataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagaga |
1442287 |
T |
|
| Q |
128 |
gaataatccatgaagagtgttttctttgatctcgccgtatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgat |
227 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1442288 |
gaataatccatgaagagtgttttctttgatctcaccgtatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgat |
1442387 |
T |
|
| Q |
228 |
ttcagaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttgctaaaacagttggttatatcagatcgatag |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1442388 |
ttcagaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttgctaaaacagttggttatatcagatcgatag |
1442487 |
T |
|
| Q |
328 |
catgcaacagc |
338 |
Q |
| |
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||| |||||| |
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| T |
1442488 |
aatgtaacagc |
1442498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 298
Target Start/End: Original strand, 7564886 - 7565107
Alignment:
| Q |
74 |
cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagtgttttctttgatctcgccgtatggccca |
173 |
Q |
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| T |
7564886 |
cataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatcttgatcttt---tatgaccca |
7564982 |
T |
|
| Q |
174 |
attaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaattagtacctaaa |
273 |
Q |
| |
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|| ||||| |||||||| |||| ||||| || | || | |||| || || ||||||||||||||||||| |||||| |||||| ||| |||||||| |
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| T |
7564983 |
atgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattgctacctaaa |
7565082 |
T |
|
| Q |
274 |
gtatgaaccctaacttcagttttgc |
298 |
Q |
| |
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||||||||| |||||| |||||||| |
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| T |
7565083 |
gtatgaaccttaacttgagttttgc |
7565107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 370920 - 370987
Alignment:
| Q |
74 |
cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaa |
141 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||| | ||||||| |
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| T |
370920 |
cataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacccatgaa |
370987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 1459676 - 1459747
Alignment:
| Q |
74 |
cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt |
145 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||| ||||||||||||| ||||| | || |||||||| |
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|
| T |
1459676 |
cataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagt |
1459747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 298
Target Start/End: Original strand, 1471058 - 1471279
Alignment:
| Q |
74 |
cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagtgttttctttgatctcgccgtatggccca |
173 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||| |||||| |||||| ||||| | || |||||||| || ||||||| | || | |||| |
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|
| T |
1471058 |
cataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccgtgaagagtcattctcttgatctag---tacgaccca |
1471154 |
T |
|
| Q |
174 |
attaatggtgccacttaaaaatatc-ccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaattagtacctaa |
272 |
Q |
| |
|
||||||||| |||| || |||| || |||| | ||| |||| | | |||||| | ||||||||||||| | ||| || |||||||||| ||||||| |
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| T |
1471155 |
attaatggtaccacatacaaatttcgccat-atacccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaa |
1471253 |
T |
|
| Q |
273 |
agtatgaaccctaacttcagttttgc |
298 |
Q |
| |
|
|||||||||| ||||| |||||||| |
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| T |
1471254 |
agtatgaaccttaactagagttttgc |
1471279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 176065 - 176000
Alignment:
| Q |
232 |
gaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttg |
297 |
Q |
| |
|
|||||||||||||| |||||| ||||| | || || |||||||| |||||| |||||| ||||||| |
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| T |
176065 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttg |
176000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 55419610 - 55419477
Alignment:
| Q |
165 |
tatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaatta |
264 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| ||||| |||| | | || |||||||||||||||||||||| |||||||||||||| || |
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| T |
55419610 |
tatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttccaaaagttg |
55419511 |
T |
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| Q |
265 |
gtacctaaagtatgaaccctaacttcagttttgc |
298 |
Q |
| |
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||||||||||||||| ||||||||| |||||||| |
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| T |
55419510 |
gtacctaaagtatgagccctaacttgagttttgc |
55419477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 3926887 - 3926763
Alignment:
| Q |
165 |
tatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaatta |
264 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||| | ||| || || || | ||||||| | |||||||||| ||| ||||| |||||||||| |
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| T |
3926887 |
tatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcctccaaaaattg |
3926788 |
T |
|
| Q |
265 |
gtacctaaagtatgaaccctaactt |
289 |
Q |
| |
|
||||||| ||||||||||||||||| |
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|
| T |
3926787 |
gtacctagagtatgaaccctaactt |
3926763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 3926960 - 3926908
Alignment:
| Q |
89 |
aaatctcttgataagactctttttctaaatcaagagagagaataatccatgaa |
141 |
Q |
| |
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||||||||||||| ||||| ||| ||||||||||||| ||||| | ||||||| |
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| T |
3926960 |
aaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaa |
3926908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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