View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_48 (Length: 332)
Name: NF1320_low_48
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 7459330 - 7459625
Alignment:
| Q |
30 |
atgattgttagaaagaaaatctcttttaattggacatgttttatgaatgcattatctatatctaaaacactacttcctcctaagaatttgacatgttatt |
129 |
Q |
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| T |
7459330 |
atgattgttagaaagaaaatctcttttaattggacatgttttatgaatgcattatctatatctaaaacactacttcctcctaagaatttgacatgttatt |
7459429 |
T |
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| Q |
130 |
tcttttgagcatacccttatctcaattcttacgagagtttatttattatccttattaattaaatcatatacattcttttgtatttgctttagtttatcgg |
229 |
Q |
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| T |
7459430 |
tcttctgagcatacccttatctcaattcttacgagagtgtatttattatccttattaattaaatcatatacattcttttgtatttgctttagattatcgg |
7459529 |
T |
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| Q |
230 |
tataatcacctattgcgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttggagtataatct |
325 |
Q |
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| T |
7459530 |
tataatcatctattacgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttggagtataatct |
7459625 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 17336542 - 17336615
Alignment:
| Q |
236 |
cacctattgcgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttgga |
316 |
Q |
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| T |
17336542 |
cacctattgtatttggtttgataagtaagttggtgtaaaatacttgg-------tgattcacaacttagtctttggttgga |
17336615 |
T |
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