View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_5 (Length: 616)
Name: NF1320_low_5
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 31992029 - 31991909
Alignment:
| Q |
3 |
gcgtaaaactaccagcaccacagaatactgcgacaaaagaactgatattggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcatt |
102 |
Q |
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| T |
31992029 |
gcgtaaaactaccagcaccactgaatactgcgacaaaagaactgatattggaagtcgatatagcccttaacatgcaactctgcaagacaaagaacgcatt |
31991930 |
T |
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| Q |
103 |
gttcaccatagaactggtgag |
123 |
Q |
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| T |
31991929 |
gttcaccatagaactggtgag |
31991909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 117 - 395
Target Start/End: Original strand, 31985609 - 31985877
Alignment:
| Q |
117 |
tggtgaggccattccttggtgttgctgcttcgtttgagaacttgaaaacttgtgactgcagagaattatatatgcgtattgattttgcaagaagttttta |
216 |
Q |
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| T |
31985609 |
tggtgtggccattgcttggtgttgctgctt-gtttgagaacttgaaaacttgtgacttcagagaattacgt---cgtattgattttgcaagaagtttttg |
31985704 |
T |
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| Q |
217 |
ggattttcgttgtatggtttcgatcgttgaatccaaaaatatttcaccaaaatatattttggaagggaggagaagataatgtagggttatgtattatgta |
316 |
Q |
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| T |
31985705 |
acattttcattgaatggtttccatcgttgaatccaaaaaaaatccaccaaaatatattttggaaaggaggaaaagataatgtagcgttatgta------- |
31985797 |
T |
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| Q |
317 |
tttatgtcaaatattttatgtttgt--ccccgtacacataactcagttggtaaggacaatgcattgctatatgcgcgagac |
395 |
Q |
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| T |
31985798 |
-ttatgtcaaatattttatgtctgtccccccgtaaacattactcagctggcaagaacgatgcattattatatgcgtgagac |
31985877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 31985930 - 31985991
Alignment:
| Q |
502 |
ataaatgtacaaacattgtgatgtaaaaatattatgatatataaatacaattatttatttat |
563 |
Q |
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| T |
31985930 |
ataaatgtactaccaatgtgatgtaaaaatattatgacatataaatacaattatatatttat |
31985991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 49067511 - 49067628
Alignment:
| Q |
8 |
aaactaccagcaccacagaatactgcgacaaaagaactgatattggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcattgttca |
107 |
Q |
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| T |
49067511 |
aaactactagcaccgctcaataccgcgacaacagaactgatattggaagtggatatagcccttcgcaagcaactttgcaagacatagaatacatcatcca |
49067610 |
T |
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| Q |
108 |
ccatagaactggtgaggc |
125 |
Q |
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| T |
49067611 |
ccatagaagtggtgaggc |
49067628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 380
Target Start/End: Original strand, 35750266 - 35750295
Alignment:
| Q |
351 |
cataactcagttggtaaggacaatgcattg |
380 |
Q |
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| T |
35750266 |
cataactcagttggtaaggacaatgcattg |
35750295 |
T |
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