View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_51 (Length: 326)
Name: NF1320_low_51
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_51 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 42550848 - 42551153
Alignment:
| Q |
21 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
120 |
Q |
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| T |
42550848 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
42550947 |
T |
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| Q |
121 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaaga |
220 |
Q |
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| T |
42550948 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaaga |
42551047 |
T |
|
| Q |
221 |
ggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaattaacattattgttatttaattcggatgtttattc |
320 |
Q |
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| T |
42551048 |
ggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaattaacattattgttatttacttcggatgtttattc |
42551147 |
T |
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| Q |
321 |
ataatt |
326 |
Q |
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|||||| |
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| T |
42551148 |
ataatt |
42551153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 285
Target Start/End: Complemental strand, 42519182 - 42518973
Alignment:
| Q |
76 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggagg |
175 |
Q |
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| T |
42519182 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctggtgg |
42519083 |
T |
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| Q |
176 |
tgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgct |
275 |
Q |
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| T |
42519082 |
tgttctttttctcgccggagctgccatgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgct |
42518983 |
T |
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| Q |
276 |
attcaggtaa |
285 |
Q |
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| T |
42518982 |
aaccaggtaa |
42518973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 285
Target Start/End: Complemental strand, 1240992 - 1240752
Alignment:
| Q |
45 |
tactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgt |
144 |
Q |
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||||||| |||||| || || || |||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| | |||| || | |
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| T |
1240992 |
tactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatct |
1240893 |
T |
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| Q |
145 |
ttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcg |
244 |
Q |
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| T |
1240892 |
ttggaagacatcttaccatgctctctggtggtgttctttttctcgctggagctgctatgaatggattcgctgaaaaagtgtggatgctttatgttggccg |
1240793 |
T |
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| Q |
245 |
catgttacttgggtttggaataggatgtgctattcaggtaa |
285 |
Q |
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| T |
1240792 |
catgttgcttggttttggaataggatgtgctaaccaggtaa |
1240752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 18235432 - 18235185
Alignment:
| Q |
38 |
caaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaact |
137 |
Q |
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|||||||||||||| |||||| ||||||||||||||||| || || ||||||||||| ||||||||||| | ||||| |||||||| || ||||| |
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| T |
18235432 |
caaccagtactgcaaattcgacagccaaacgttaacattattcacatcctctttgtacgtggctgctcttatcgcatctcttggggcgtcgtggctaact |
18235333 |
T |
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| Q |
138 |
cgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattc |
237 |
Q |
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||| | ||||||| ||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
18235332 |
cgagtgcttggaagacgtatcaccatgctttctggtggtgttctttttcttgctggtgctgccatgaatggctttgctcaagaggtttggatgctcattg |
18235233 |
T |
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| Q |
238 |
ttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaa |
285 |
Q |
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| T |
18235232 |
ttggtcgtatgttacttggattcggtattggatgtgctaatcaggtaa |
18235185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 285
Target Start/End: Complemental strand, 41972595 - 41972385
Alignment:
| Q |
75 |
ttgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggag |
174 |
Q |
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|||||||| ||||||||||||||||| |||||||| | || ||||| |||||||| |||||| || |||||||| ||||| |||||| | ||||| | |
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| T |
41972595 |
ttgtttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctggtg |
41972496 |
T |
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| Q |
175 |
gtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgc |
274 |
Q |
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| T |
41972495 |
gtgttctttttctcgctggagctgctatgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgc |
41972396 |
T |
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| Q |
275 |
tattcaggtaa |
285 |
Q |
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|| ||||||| |
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| T |
41972395 |
taaccaggtaa |
41972385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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