View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_56 (Length: 281)
Name: NF1320_low_56
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 32065196 - 32065365
Alignment:
| Q |
70 |
aatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtcc |
169 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32065196 |
aatacagacaaataacgtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcagtaacactaaattaaagtaaaatgtatttcgtct |
32065295 |
T |
|
| Q |
170 |
gaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
32065296 |
gaattcagaacaaatacatttgactaactccttaagaaagtggacaaatgtttgattccttactatcgtg |
32065365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 32065938 - 32066135
Alignment:
| Q |
36 |
tcgaataatatggtaattcagtcaatnnnnnnntaatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatca |
135 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
32065938 |
tcgaataatatgataatccagtcaataaaaaaataatatagacaaataaagtacttatctctcattatttaatatggcgtaaaggtcaaacgtcagatga |
32066037 |
T |
|
| Q |
136 |
ttaacactaaattaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaat |
235 |
Q |
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|||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32066038 |
gtaacactaaa-----gtaaaatgtatttcgtccgaattcagaaaaaatacatttgactaactccttaagaaagtggacatatgtttgagtacttacaat |
32066132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 32066484 - 32066649
Alignment:
| Q |
69 |
taatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||| |||||||| |
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| T |
32066484 |
taatatagacaaataaagtacttatctctcattatttaatacggcgtaaagttcaaacgtcagatgagtaacactaaa-----gtaaaatgcatttcgtc |
32066578 |
T |
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| Q |
169 |
cgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32066579 |
cgaattcagaacatatacatttgactaactccttaagaaagtggacatatgtttgattccttacaatcgtg |
32066649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 32066229 - 32066386
Alignment:
| Q |
75 |
agacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtccgaatt |
174 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||||||| |
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| T |
32066229 |
agacaaataaagt--ttatctctcattatttaatacggcgtaaaggtcaaacgtcatatgggtaacac-----taaagtaaaatgtatttggtccgaatt |
32066321 |
T |
|
| Q |
175 |
cataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32066322 |
cagatcaaataaatttgactaactccttaagaaagtggacatatgtttgattccttacaatcgtg |
32066386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 32072884 - 32073035
Alignment:
| Q |
70 |
aatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtcc |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||||||| | ||||||||||||| |||| |
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| T |
32072884 |
aatacagacaaataaagtacttatctcttattatttaatacggcgtaaaggtcaaactgcagatgagtaacactaca-----gtaaaatgtatttggtcc |
32072978 |
T |
|
| Q |
170 |
gaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgatt |
226 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32072979 |
gaattcagatcaaatacatttgactaactccttaagaaagtggacatatgtttgatt |
32073035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 32065458 - 32065615
Alignment:
| Q |
75 |
agacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtccgaatt |
174 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | | |||| ||||||||||| ||||| ||||||||| |
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| T |
32065458 |
agacaaataaagt--ttatctctcattatttaatacgacgtaaaggtcaaacgtcagatgagttacac-----taaagtaaaatttatttggtccgaatt |
32065550 |
T |
|
| Q |
175 |
cataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
32065551 |
caaaacaaataaatttgactaactccttaagaaagtgggcatatgtttgattccttacaatcgtg |
32065615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 32065710 - 32065874
Alignment:
| Q |
70 |
aatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtcc |
169 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| || |||||||| |||||||| | | |||||| ||||||||||||||||| || |
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| T |
32065710 |
aatacagataaataaagtacttatctctcattatttaatatggtgtaaaggtaaaacgtcatgtgagtaacac-----taaagtaaaatgtatttggtat |
32065804 |
T |
|
| Q |
170 |
gaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |||||||||||||||| |||||||| |||||||||||| |
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|
| T |
32065805 |
gaattcagatcaaataaatttgactaactccataagaaagtggacataagtttgattccttacaatcgtg |
32065874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 32073713 - 32073878
Alignment:
| Q |
70 |
aatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtcc |
169 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| | | ||||||||||| | || |
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| T |
32073713 |
aatacagacaaatgaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcatatgagtaacac-----ttatgtaaaatgtatgttgttt |
32073807 |
T |
|
| Q |
170 |
gaattcataacaaataca-tttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
||| | | | |||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||| |
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|
| T |
32073808 |
gaacttagatcaaatacattttgactaactccttatgaaagtggacatatgtttgattccttacactcgtg |
32073878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 32073974 - 32074139
Alignment:
| Q |
70 |
aatatagacaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtcc |
169 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| || | |||||| ||||||||||||||| | |||| |
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| T |
32073974 |
aatacagacaaatggagtacttatctctcattatttaatacggcataatggtcaaacgtcatatgagtaacac-----taaagtaaaatgtatgtggtcc |
32074068 |
T |
|
| Q |
170 |
gaattcataacaaatacat-ttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||| ||||||| |||||||||||| | |||||| ||||| |
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|
| T |
32074069 |
gaattcagatcaaatacatattgactaactccttgtgaaagtgaacatatgtttgactccttacattcgtg |
32074139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 32066744 - 32066855
Alignment:
| Q |
77 |
acaaataaagtacttatctctcattatttaatacggcgtaaaggtcaaacgtcagatcattaacactaaattaaagtaaaatgtatttcgtccgaattca |
176 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |
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|
| T |
32066744 |
acaaataaagt--ttatctctcattatttaatacggcgtaaagttcaaacgtcagatgagtaacac-----taaagtaaaatgtatttggtccgaattca |
32066836 |
T |
|
| Q |
177 |
taacaaatacatttgacta |
195 |
Q |
| |
|
| || ||||||||||||| |
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|
| T |
32066837 |
gatcatatacatttgacta |
32066855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 32065056 - 32065100
Alignment:
| Q |
195 |
aactccttaagaaagtggacatatgtttgattacttacaatcgtg |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
32065056 |
aactccttaagaaagtggatatatgtttgattctttacactcgtg |
32065100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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