View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320_low_57 (Length: 281)
Name: NF1320_low_57
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 34899975 - 34899913
Alignment:
| Q |
7 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctcccttt |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctcttt |
34899913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 49247459 - 49247526
Alignment:
| Q |
69 |
tgtttacagaggaagggactttggtcaaggaagttaaagaagnnnnnnnncaagaagaggctttggtt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49247459 |
tgtttacagaggaagggactttggtcaaggaagttaaagaagaagaaaaacaagaagaggctttggtt |
49247526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 49247597 - 49247629
Alignment:
| Q |
207 |
tcaaagacacaaaggaggaagataatgtggcca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49247597 |
tcaaagacacaaaggaggaagataatgtggcca |
49247629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 40549729 - 40549694
Alignment:
| Q |
235 |
ggccagtgttgatgttactatatcctttgtaagtat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549729 |
ggccagtgttgatgttactatatcctttgtaagtat |
40549694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University