View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_60 (Length: 266)
Name: NF1320_low_60
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22933280 - 22933044
Alignment:
| Q |
1 |
ttgcttgcattgaaaagaccaagatactgaataggtaaagctttgagatcctttgtaggggctattgtgaaagccatgccatgaccaccaactctaggat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22933280 |
ttgcttgcattgaaaagaccaagatattgaataggtaaagcattgagatccttagtaggtgctattgtgaaagccatgccatgaccaccaactctaggat |
22933181 |
T |
|
| Q |
101 |
actcaggaacaacagcaatggcaaaggttgatgaaaaggaaaaagctttaccagttgttgagttctttagctgaaaaggttgagagtaaaaagcatggcc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22933180 |
actcaggaacaacagcaatagcaaaggttgatgaaaaggaaaaagctttaccagttgttgagttctttagctgaaaaggttgagagtaaaaagcatggcc |
22933081 |
T |
|
| Q |
201 |
cattaatttgcttgaatcatttgttaatcttattatt |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22933080 |
cattaatttgcttgaatcatttgttaatcttattatt |
22933044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 22922322 - 22922543
Alignment:
| Q |
15 |
aagaccaagatactgaataggtaaagctttgagatcctttgtaggggctattgtgaaagccatgccatgaccaccaactctaggatactcaggaacaaca |
114 |
Q |
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| T |
22922322 |
aagaccaagatattgactaggtaaagctttgagatcttttgaagggactatagtaaaagccatgccatggccaccaagtttaggatattcaggaacacaa |
22922421 |
T |
|
| Q |
115 |
gcaatggcaaaggttgatgaaaaggaaaaagctttaccagttgttgagttctttagctgaaaaggttgagagtaaaaagcatggcccattaatttgcttg |
214 |
Q |
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| T |
22922422 |
gcaagtgcaaaagatgatgagaaagagaaaactttaccagtagttttgttctttatctgaaatggttgaggataaaaagcatgacccaataatctacttg |
22922521 |
T |
|
| Q |
215 |
aatcatttgttaatcttattat |
236 |
Q |
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|||||||||||||||||||| |
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| T |
22922522 |
tttcatttgttaatcttattat |
22922543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 15628400 - 15628624
Alignment:
| Q |
9 |
attgaaaagaccaagatactgaataggtaaagctttgagatcctttgtaggggctattgtgaaagccatgccatgaccaccaactctaggatactcagga |
108 |
Q |
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||||||||||||||||||||||| ||| || ||| ||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
15628400 |
attgaaaagaccaagatactgaagaggcgaaccttcgagatccttagtagttgctattgtgaaagccatgccatgaccacctatattaggatactcaggg |
15628499 |
T |
|
| Q |
109 |
acaacagcaatggcaaaggttgatgaaaaggaaaaagctttaccagttgttgagttctttagctgaaaaggttgagagtaaaaagcatggcccattaatt |
208 |
Q |
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| T |
15628500 |
acaacagcaagagcaaaagatgaagaaaatgagtaagctttacgagttgtcgagttccttagctgaaaaggtaatgagtaaaaagcatggcccatttcat |
15628599 |
T |
|
| Q |
209 |
tgcttgaatcatttgttaatcttat |
233 |
Q |
| |
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|| ||| | ||||||||||||||| |
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| T |
15628600 |
tgtttgtgtgatttgttaatcttat |
15628624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 17394086 - 17394032
Alignment:
| Q |
35 |
gtaaagctttgagatcctttgtaggggctattgtgaaagccatgccatgaccacc |
89 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| |
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| T |
17394086 |
gtaaagctttgagatcctttgtagttgctatagtgaaagtcataccatgaccacc |
17394032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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