View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_61 (Length: 265)
Name: NF1320_low_61
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1452600 - 1452855
Alignment:
| Q |
1 |
aatggttccatttgctttgatacctcggtgctgctggttgcaggaaattgttaaaccaaatggtacaggccaacnnnnnnnctaccaaaaagtaaatttg |
100 |
Q |
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| T |
1452600 |
aatggttccatttgctttgatacctcggtgctgctggttgcaggaaattgttaaaccaaatggtacaggccaacaaaaaaactaccaaaaagtaaatttg |
1452699 |
T |
|
| Q |
101 |
acttgcaacaaaatatagaaaacaaagtacgttataaactttatgtctattctgtccttgcnnnnnnnnnnnnnnnnnnnnngtacaattggaagaatta |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1452700 |
acttgcaacaaaatatagaaaacaaagtacattataaactttatgtctattctgtccttgctttttgattttttttggttttgtacaattggaagaatta |
1452799 |
T |
|
| Q |
201 |
attactaataatttagaataaaagagattgttgaagtataattgcttgagtattat |
256 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1452800 |
attactaataatttagaataaaagagattgatgaagtataattgcttgagtattat |
1452855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 1453996 - 1454028
Alignment:
| Q |
84 |
accaaaaagtaaatttgacttgcaacaaaatat |
116 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
1453996 |
accaaaaagtaaatttgacttgcaccaaaatat |
1454028 |
T |
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