View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_62 (Length: 264)
Name: NF1320_low_62
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29840122 - 29840363
Alignment:
| Q |
1 |
tcgttagaccatctttttagcgcataataaaacgtatcgatcacgcagagatatgttgaatatcaaatgtgttttttatgttgttaagctagaaaatatt |
100 |
Q |
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| T |
29840122 |
tcgttagaccatctttttagcgcataataaaacgtatcgatctcacagagacatgttgaatatcaaatgtgttttttatgttgttaagctagaaaatatt |
29840221 |
T |
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| Q |
101 |
taatatttgggagtttaatga-ttttaatttttagaaaaatatatgatgaaataaacgacttgaaattatatattcatcacaataat-nnnnnnntctaa |
198 |
Q |
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| T |
29840222 |
taatatttgggagtttaatgatttttcatttttaaaaaaatatatgataaaataaacgacttggaattatatattcatcacaataataaaaaaaatctaa |
29840321 |
T |
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| Q |
199 |
cctcaattcttccttcctattggaaatcaaagtctattgatgatgt |
244 |
Q |
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| T |
29840322 |
cctcaatt----cttcctattggaaatcaaagtctataggtgatgt |
29840363 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 23660055 - 23659974
Alignment:
| Q |
15 |
ttttagcgcataataaaacgtatcgatcacgcagagatatgttgaatatcaaatgtgttttttatgttgttaagctagaaaa |
96 |
Q |
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||||| |||||||||||| |||| ||| | |||||| |||||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
23660055 |
ttttatcgcataataaaatgtattgatttcacagagacatgttgaatatcaaatgtattttttaagttgtttagctagaaaa |
23659974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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