View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_75 (Length: 251)
Name: NF1320_low_75
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_75 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 1107930 - 1107690
Alignment:
| Q |
16 |
attgtgtttgtcgcttggatacgaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1107930 |
attgtgtttgtcgcttggatacgaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggag |
1107831 |
T |
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| Q |
116 |
aataacccatcaatggcatactcaggagccatataaccactg--aaaaaaccacaaatgagtaaatttaaatt---gaaaatattgtaaatgacttaaag |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||| |||| |||| | | |||||||||||||| |
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| T |
1107830 |
aataacccatcaatggcatactcgggagccatataaccactggaaaaaaattacaaatgagttaatttgaattaaaaaaaaaaatctaaatgacttaaag |
1107731 |
T |
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| Q |
211 |
atgttaatgaaaatacttactgcgtcccaactactctgttt |
251 |
Q |
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| T |
1107730 |
atatcaatgaaagtacttactgtgtcccaactactctgttt |
1107690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 1050785 - 1050647
Alignment:
| Q |
23 |
ttgtcgcttggatacgaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacc |
122 |
Q |
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|||| ||||||| | | ||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| | || |
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| T |
1050785 |
ttgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaaaagcc |
1050686 |
T |
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| Q |
123 |
catcaatggcatactcaggagccatataaccactgaaaa |
161 |
Q |
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| T |
1050685 |
catcaatggcatattctggagccatataaccactgaaaa |
1050647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 1077666 - 1077459
Alignment:
| Q |
44 |
cctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggag |
143 |
Q |
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| T |
1077666 |
cctttatttttatgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggcatattctggag |
1077567 |
T |
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| Q |
144 |
ccatataaccactgaaaaaaccacaaatgagtaaatttaaattgaaaatattgtaaatgacttaaagatgttaatgaaaatacttactgcgtcccaacta |
243 |
Q |
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|||||||||||||||||| |||||||||| ||||| |||| | | | ||| ||||||| || | ||||||| ||||||||| || ||||||| |
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| T |
1077566 |
ccatataaccactgaaaagtttacaaatgagttaatttgaattattttttctttcaataacttaaaaatatcaatgaaactacttactgtgttccaacta |
1077467 |
T |
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| Q |
244 |
ctctgttt |
251 |
Q |
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|||||||| |
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| T |
1077466 |
ctctgttt |
1077459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 1091566 - 1091428
Alignment:
| Q |
23 |
ttgtcgcttggatacgaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacc |
122 |
Q |
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|||| ||||||| | | ||| |||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||| |||||| | || |||| | |
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| T |
1091566 |
ttgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagtaataatacaccaaagctaaatacatcagattttgtagaaaatagtc |
1091467 |
T |
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| Q |
123 |
catcaatggcatactcaggagccatataaccactgaaaa |
161 |
Q |
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| T |
1091466 |
catcaatggcgtattctggagccatataaccactgaaaa |
1091428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 23361556 - 23361434
Alignment:
| Q |
38 |
gaaagccctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatact |
137 |
Q |
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||||| ||||||||| || ||||| ||| |||||||| | ||| || ||||||||| ||||||| ||||| |||||||||| |||||| || ||||| | |
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| T |
23361556 |
gaaagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatatt |
23361457 |
T |
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| Q |
138 |
caggagccatataaccactgaaa |
160 |
Q |
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|||| |||||||||||||||||| |
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| T |
23361456 |
caggtgccatataaccactgaaa |
23361434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 23555929 - 23555847
Alignment:
| Q |
79 |
taatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaa |
161 |
Q |
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| T |
23555929 |
taatacgccaaaactaaatacatctgatttaatagagaataatccatcgatggcatattcaggtgccatataaccactgaaaa |
23555847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 8048 - 8160
Alignment:
| Q |
48 |
tatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccat |
147 |
Q |
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|||||||| ||||||| | ||| |||| | ||||| |||||||||||||||||| ||||| || || ||||| |||||| ||||||| ||||| ||||| |
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| T |
8048 |
tatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgatttgatagaaaataatccatcagtggcatattcaggtgccat |
8147 |
T |
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| Q |
148 |
ataaccactgaaa |
160 |
Q |
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| T |
8148 |
atagccgctgaaa |
8160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 22689140 - 22689218
Alignment:
| Q |
85 |
gccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaaaa |
163 |
Q |
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| T |
22689140 |
gccaaagctaaatacatctgattttatagagaataatctatgaataacatattcaggtgccatgtaaccactggaaaaa |
22689218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 28433453 - 28433363
Alignment:
| Q |
71 |
tctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaa |
161 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||| |||||||| |||| ||| |||| || || ||||||||||| ||||||| |
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| T |
28433453 |
tctagcaataatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattctggtgccatataaccgctgaaaa |
28433363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 40125826 - 40125858
Alignment:
| Q |
131 |
gcatactcaggagccatataaccactgaaaaaa |
163 |
Q |
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| T |
40125826 |
gcatactcaggagccatataaccactgcaaaaa |
40125858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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