View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_76 (Length: 242)
Name: NF1320_low_76
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 9640285 - 9640397
Alignment:
| Q |
115 |
caaaacagatttattggttattcgattcaactgtggttcaatcgattgaaccgtgactaagttgaataaaacaacattatcatgatctatacctcttcag |
214 |
Q |
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| T |
9640285 |
caaaacagatttataagttattcgattcaactgtggttcaatcgattgaaccgtgactaagttgaataaagcaacattatcatgatctatacctcttcag |
9640384 |
T |
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| Q |
215 |
cagcgctggcaac |
227 |
Q |
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| T |
9640385 |
cagcgctggcaac |
9640397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9640195 - 9640142
Alignment:
| Q |
1 |
gccggtccgattctgaaagcacagatgcatgacgcagccgcaaagtgatcgcag |
54 |
Q |
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| T |
9640195 |
gccggtccgattctgaaaacacagatgcatgacgcagccgcaaagtggtcgcag |
9640142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 9656649 - 9656689
Alignment:
| Q |
190 |
attatcatgatctatacctcttcagcagcgctggcaacagc |
230 |
Q |
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| T |
9656649 |
attatcatgatctatacctcttcggcagtgctggcaacagc |
9656689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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