View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_78 (Length: 242)
Name: NF1320_low_78
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 8177699 - 8177881
Alignment:
| Q |
56 |
agagaatcattttagagaaaaagtgagaaatagaaacaaaccttgacatctattgattcaaagtatataaacataaagtatcctatcagcaatccaagtg |
155 |
Q |
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| T |
8177699 |
agagaatcattttagagaaaaagtgagaaatagaaacaaaccttgacatctattgattcaaagtatataaacataaagtatcctatcagcaatccaagtg |
8177798 |
T |
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| Q |
156 |
aagttccaattccaaatcctaaaaaactagctatagtacttaaaatactcatttcaacttcaatatcaatgcctatgatacta |
238 |
Q |
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| T |
8177799 |
aagttccaattccaaatcctaaaaaactagctatagtacttaaaatactcatttcaacttcaatatcaatgtctatggtacta |
8177881 |
T |
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